Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq14623 131 1e-25 seq7414 125 6e-24 seq32362 116 3e-21 seq2166 113 4e-20 seq25614 105 6e-18 seq28136 100 2e-16 seq19645 87.8 2e-12 >seq14623 Length=969 Score = 131 bits (144), Expect = 1e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || |||||||| ||||||||| | || ||||||||||| || || Sbjct 34 ATGCAAATCTTCGTCAAAACTCTTACCGGCAAGACCATCACTCTTGAAGTCGAGAGCTCT 93 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || |||||| || || || |||||||| || || || ||| Sbjct 94 GACACCATTGACAATGTAAAGGCAAAAATCCAGGATAAGGAAGGCATTCCCCCGGACCAA 153 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 |||||| | |||| || || || || ||||||| | ||| || |||||||||| Sbjct 154 CAGCGTCTGATATTTGCTGGAAAGCAGCTGGAAGATGGCCGAACCCTTGCCGATTACAAT 213 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || ||||| || || | ||| | || | ||| || |||||||||| Sbjct 214 ATCCAGAAGGAATCCACGCTGCATCTTGTCCTCCGTCTGAGGGGTGGCAT 263 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || || || ||| | || || | ||||| || || Sbjct 490 ATGCAGATTTTTGTTAAAACCCTCACTGGAAAGACGATCACCTTGGAAGTTGAGAGCTCG 549 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| || || || |||||||| ||||| || || || || Sbjct 550 GATACTATTGATAATGTCAAGGCCAAGATCCAGGACAAAGAGGGCATTCCCCCTGACCAG 609 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||||||||||| | ||||| || || | || || || ||| || ||||||||||| Sbjct 610 CAGCGTTTAATCTTTGCCGGAAAGCAGCTCGAGGATGGTAGAACCCTTGCCGATTACAAC 669 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || || || ||||| || |||| | ||| || |||||||||| Sbjct 670 ATCCAGAAAGAATCCACCTTGCACCTGGTCCTCCGTCTGAGGGGTGGCAT 719 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || ||||| ||||| || ||| | || || | ||||| || || Sbjct 261 CATGCAGATCTTCGTCAAAACCCTGACTGGTAAGACGATAACGTTGGAAGTTGAGAGCTC 320 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 || | ||||| | || ||| || || || ||||| ||||| || || || || || Sbjct 321 GGATACCATTGACAATGTAAAAGCCAAGATCCAGGACAAGGAAGGAATCCCGCCTGACCA 380 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 || ||| | |||| ||||| || || | |||||| | ||| | | || ||||| Sbjct 381 GCAACGTCTGATATTTGCCGGAAAGCAGCTCGAAGACGGCCGAACCCTGGCAGACTACAA 440 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| || ||| | ||| | || | |||||| ||||||| || Sbjct 441 TATTCAAAAGGAATCAACCCTGCATCTCGTCCTCCGTTTGAGGGGTGGTAT 491 >seq7414 Length=1926 Score = 125 bits (138), Expect = 6e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| | || |||||||| || || |||| Sbjct 224 ATGCAGATTTTCGTGAAGACGTTGACGGGCAAGACGATCACTCTTGACGTCGAGTCGTCG 165 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 |||||||| || | || || || ||||| ||||| |||||||| || || || || Sbjct 164 GACTCGATCGACAACGTGAAGACGAAGATTCAGGACAAGGAAGGCATTCCTCCTGACCAG 105 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTC-CGATTACAA 27166 |||||||| || | ||||||||| || |||| || | || |||| ||| ||||| Sbjct 104 CAGCGTTTGATTTTCGCCGGCAAGCAGCTGGAGGATGGC-CGCACGTTGAGCGACTACAA 46 Query 27167 CATTCAAAAGGAGTCGAC 27184 |||||| ||||||||||| Sbjct 45 CATTCAGAAGGAGTCGAC 28 >seq32362 Length=298 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||||||||| || || |||| |||||| |||| || || || || || ||| Sbjct 6 ATGCAGATATTTGTGAAGACGTTGACAGGCAAGACTATCACACTGGAGGTTGAGAGCTCC 65 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || ||||||| | || ||| |||||||| ||||| ||||| || ||||| ||||| Sbjct 66 GATACGATTGATAACGTAAAAGCGAAAATTCAGGACAAGGAAGGGATTCCACCTGATCAG 125 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | |||| || || ||||| |||| || | || | ||||||| ||| Sbjct 126 CAGAGGCTCATATTTGCTGGTAAACAGCTGGAGGATGGGCGAACTCTGGCCGATTATAAC 185 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||| || || | || | || |||||| |||| ||||| Sbjct 186 ATCCAGAAGGAATCTACACTTCACCTTGTCTTGCGTCTGCGTGGTGG 232 >seq2166 Length=5462 Score = 113 bits (124), Expect = 4e-20 Identities = 143/193 (74%), Gaps = 3/193 (2%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || |||||||||||| | || || | || ||||| ||||| Sbjct 964 CATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACGTTGGACGTGGAGCCGTC 905 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||||| ||||| | ||||| || ||||| || || || ||||| || || || || || Sbjct 904 CGACTGCATTGACAATGTCAAGCAGAAAATCCAGGAAAAGGAAGGTATTCCGCCTGACCA 845 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCG-TTTCCGATTACA 27165 ||||| | || | |||||||| || | || || | ||| || |||| || |||| Sbjct 844 GCAGCGCCTGATTTTTGCCGGCAAGCAGCTCGAGGA-TGGCCGAACGCTTTCGGACTACA 786 Query 27166 ACATTCA-AAAGG 27177 |||| || ||||| Sbjct 785 ACATCCAGAAAGG 773 >seq25614 Length=477 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 |||||| || ||||||||||| || || || ||| | ||||| | ||||| || || Sbjct 271 CATGCAAATCTTTGTAAAAACACTAACTGGAAAGACAATTACATTGGAAGTTGAGAGCTC 212 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 ||| | ||||| | ||||| || || || ||||| ||||| || || || || || Sbjct 211 GGACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGACCA 152 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||| || || || |||| || | |||| | | |||||||| Sbjct 151 GCAGAGGCTTATCTTCGCTGGTAAGCAGCTGGAGGATGGCAGGACCTTGGCTGATTACAA 92 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| |||||| | |||||||| | ||| | | || ||||| Sbjct 91 TATTCAAAAGGAATCGACCCTGCATTTGGTGCTTCGTCTAAGAGGAGGCAT 41 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 27009 CTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATTGAGATGGTCAAA 27068 || ||||| ||| | || ||||| ||||| || || ||| | ||||| | || ||| Sbjct 477 CTCACCGGTAAGACCATCACTCTCGAAGTCGAGAGCTCTGACACCATTGACAATGTTAAA 418 Query 27069 CAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTAATATACGCCGGC 27128 || || || ||||| ||||| || || ||||| || |||||| | || | ||| || Sbjct 417 GCTAAGATCCAGGACAAGGAAGGGATCCCCCCCGACCAGCAGCGTCTGATCTTCGCAGGA 358 Query 27129 AAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAGGAGTCGACCTTA 27188 || || | || ||| | ||| || ||||||||||||| || || || || ||| | Sbjct 357 AAGCAGCTTGAGGACGGCCGAACCCTTGCCGATTACAACATCCAGAAAGAATCTACCCTC 298 Query 27189 CATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || | ||| | |||||| |||||||||| Sbjct 297 CACCTTGTTCTCCGTTTGAGGGGTGGCAT 269 >seq28136 Length=407 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || ||||| || ||||| |||||| | || || | ||||| ||| | Sbjct 12 ATGCAGATCTTCGTAAAGACCCTGACGGGCAAGACCATAACCTTAGAAGTTGAAAGCAGC 71 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | || || | || || ||||| || ||||||||||| || || ||||| || Sbjct 72 GATACAATCGACAATGTGAAGGCCAAAATCCAGGACAAAGAAGGGATCCCGCCCGACCAG 131 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | |||| || ||||| || |||||||| | || | | ||||||||| Sbjct 132 CAACGTCTGATATTTGCGGGCAAGCAGTTGGAAGATGGACGCACTCTGGCGGATTACAAC 191 Query 27168 ATTCAAAAGGAGTCGACCTTACA 27190 ||||| || ||||| ||||| || Sbjct 192 ATTCAGAAAGAGTCAACCTTGCA 214 >seq19645 Length=690 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || || ||||| ||| | || || || || ||||| ||| Sbjct 120 ATGCAGATCTTCGTGAAGACCCTTACCGGGAAGACCATCACGCTCGAGGTGGAGAGCTCC 179 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| ||||||| | ||||| || || || ||||| |||||||| || || || || Sbjct 180 GACACGATTGACAATGTCAAGGCGAAGATCCAGGACAAGGAAGGCATTCCCCCGGACCAG 239 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | | |||| |||||| || || | || || | || | | || || ||| Sbjct 240 CAGAGGCTGATATTCGCCGGGAAGCAGCTCGAGGATGGCCGCACACTCGCGGACTATAAC 299 Query 27168 ATTCAAAAGGAGTCGACC 27185 || || |||||||||||| Sbjct 300 ATCCAGAAGGAGTCGACC 317 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| || || || || |||||||| ||| | || || || || ||||| || Sbjct 347 CATGCAGATCTTCGTGAAGACGCTGACCGGGAAGACCATAACCCTCGAGGTGGAGAGCTC 406 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| |||| || | ||||| ||| || || ||||| || || || || || || || Sbjct 407 CGACACGATCGATAACGTCAAGGCAAAGATCCAGGACAAGGAGGGGATTCCTCCGGACCA 466 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||| | | || | ||||| || || | || || | || || | || ||||| Sbjct 467 GCAGAGGCTGATCTTTGCCGGGAAGCAGCTCGAGGATGGCCGCACGCTTGCGGACTACAA 526 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||| || |||||||||||| | || | || | ||| | || ||||| Sbjct 527 CATCCAGAAGGAGTCGACCCTTCACCTTGTGCTCCGTCTCCGTGGTGG 574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434725192937280