Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028656.1 Length=65955 Score E Sequences producing significant alignments: (Bits) Value seq29522 116 2e-21 seq12715 104 1e-17 seq19013 98.7 4e-16 seq24736 84.2 9e-12 seq7343 82.4 3e-11 >seq29522 Length=371 Score = 116 bits (128), Expect = 2e-21 Identities = 84/96 (88%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 27167 TTATTATCCTGCGCC-CGGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCC 27225 |||| ||||| |||| |||||| ||||||||||||| ||||| ||||||||||||||| Sbjct 185 TTATAATCCTCCGCCACGGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCT 244 Query 27226 AGGTCGCTGGTTCAAATCCAGCAAGGGCCACCATAT 27261 |||||||||||||| ||||||| ||||||||| || Sbjct 245 TGGTCGCTGGTTCAAGTCCAGCAGGGGCCACCAAAT 280 >seq12715 Length=1128 Score = 104 bits (114), Expect = 1e-17 Identities = 227/334 (68%), Gaps = 12/334 (4%) Strand=Plus/Minus Query 65108 TCGTTACGGATCTGTGCATGACTCATTAACGCGAAGATAAAGGTGCCGCCGCAGATGTTC 65167 ||| | |||||||||||||| || || | || ||||||||| |||||||| ||| || Sbjct 396 TCGCTGCGGATCTGTGCATGGCTGATCAGGGCAAAGATAAAGCTGCCGCCGATGATATTG 337 Query 65168 CCCGCTAAAGTAGGTAGTGC---GAAGGGCCAGATGAAATCGCTCCAG--TGCAGCGTAC 65222 || || | ||||| || || |||| |||||||| |||| | | || | Sbjct 336 CCGGCCAGGGTAGGCCCCGCAAACAACAGCCA---GAAATCGCCCCAGCTTACTTCG--C 282 Query 65223 CGTTAAACACCAGATAGAGGATTTCAACAGAACCGACAACGATGTGAGTGGTGTCACCCA 65282 || | | |||||||| | || || || ||||| ||||| || ||| |||||||| Sbjct 281 CGGCATATACCAGATAAGACACCTCTACCGAGCCGACGACGATATGGGTGAAGTCACCCA 222 Query 65283 GGGCAATAAGCCAGGTCATCAATATAATCACCACAATCTTTGCCGCACCCGCTGCAGG-A 65341 | || || || | || |||| | || | | ||| ||| ||| | | ||| | Sbjct 221 GCGCCATCAGGTAAGTGATCATCACGATAATGGCGATC-TTGGCGCTTTCCATCGAGGCA 163 Query 65342 AACATCCATACCATAGTGGCGATCAGCCAGCCGGAAATGATCGCGTTGGCAAACATCTCG 65401 | |||||| ||||| |||||||||| |||||| || ||||| | ||||| | ||||| | Sbjct 162 ATCATCCACACCATGGTGGCGATCATCCAGCCCGAGATGATGCCTTTGGCGAGCATCTTG 103 Query 65402 CTGGGGGTGTTCTTCATCACATCCATGCCGATTT 65435 || ||| | |||||| | |||||||| Sbjct 102 GACAGGTCGTTTTCCATCACCTTACGGCCGATTT 69 >seq19013 Length=720 Score = 98.7 bits (108), Expect = 4e-16 Identities = 319/487 (66%), Gaps = 20/487 (4%) Strand=Plus/Minus Query 33015 GCCCAGCCTTCCCAGCAATCGTCGATTGTTATACCAGTCCACCCACGTTAGTGTGGCCAG 33074 ||||||| ||| |||||| | | ||| |||| ||||||| || |||||||| Sbjct 595 GCCCAGCGGCTCCATCAATCGGTGGTGGTTGAACCAAGCCACCCATTCCAGCGTGGCCAG 536 Query 33075 TTCCACTTC-TGCACGGTTTTTCCAGCTCTTACG---GTGTATTACCTCCGCTTTGTAAA 33130 |||||| | ||| ||| || |||| | || ||| || ||||| || ||||| | Sbjct 535 TTCCACCGCCTGCTTGGTCTT-CCAGGGCCCGCGCCGGTGGATCACCTCGGCCTTGTAGA 477 Query 33131 GACCATTGATGCTCTCAGCCATCGCGTTGTCATACGAGTCGCCTGTACTCCCTGTTGATG 33190 | || |||||| |||| |||| |||||||| || |||||| | || ||| | Sbjct 476 GCCCGTTGATGGTCTCGGCCAGGGCGTTGTCGTAGCTGTCGCCCTTGGAGCCCACTGACG 417 Query 33191 CCAGTAATCCGGCTTCTTTTAGTCGCTCCGTATAGGCCAGTGACACATACTGAGAGCCTT 33250 | | ||||| || || ||||| | ||| | |||| || || || || Sbjct 416 ACTCGATGCCGGCCTCAGCCAGACGCTCGCTGTAGCGGATGGACAGGTATTGCGATCCAC 357 Query 33251 TATCGCTGTGATGGATGGTGCCAGACG----GACGA-----CGGGCCCACAACGCCTGCT 33301 ||| |||||| | ||| || | || ||| | ||| ||||| | Sbjct 356 GATCCGAGTGATGCACCAGGCCTTGCGTCTGGCCGGGCTTGCGGTCGTACAGGGCCTGTT 297 Query 33302 CCAGCGCATCCAGCACGAATGTCGTTTCCATAGAC--GATGAGACCCGCCACCCCACGAT 33359 ||||||| || |||||||| || | ||| || | | | | |||| |||||||| Sbjct 296 CCAGCGCGTCGAGCACGAACTCGGTGTGCATCGAACTGCTCTGGC--GCCAGCCCACGAT 239 Query 33360 GTATCCGGCA-AACACATCAATGATAAACGCCACATAGACGAAGCCCTGCCATGTGCTGA 33418 | ||||| ||||| || | | |||||||| ||||| |||||||||| || || Sbjct 238 GCG-CCGGCTGAACACGTCCACCACGAACGCCACGTAGACCCAGCCCTGCCAGGTCGAGA 180 Query 33419 CGTAAGTAAAATCAGCCACCCACAGCTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTA 33478 |||| || || || | ||||||||||||| || || || || |||||| ||||| | Sbjct 179 CGTAGGTGAAGTCCGAGACCCACAGCTGGTTGGGCCGCTCGGCGCGGAACTGCCGGTTGA 120 Query 33479 CGCGGTC 33485 | ||||| Sbjct 119 CCCGGTC 113 >seq24736 Length=504 Score = 84.2 bits (92), Expect = 9e-12 Identities = 61/71 (86%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 1319 ATGGTGTCCCCTGCAGGAATCGAACCTGCAATTAGCCCTTAGGAGGGGCTCGTTATATCC 1378 |||| ||||||||| ||||||||||| ||| |||||||||||||||||| || ||||| Sbjct 116 ATGGCGTCCCCTGCTGGAATCGAACCAGCATCTAGCCCTTAGGAGGGGCTTATTCTATCC 57 Query 1379 ATTTAACTAAG 1389 || ||||||| Sbjct 56 GTTGAACTAAG 46 >seq7343 Length=1942 Score = 82.4 bits (90), Expect = 3e-11 Identities = 62/72 (86%), Gaps = 2/72 (3%) Strand=Plus/Minus Query 1324 GTCCCCT--GCAGGAATCGAACCTGCAATTAGCCCTTAGGAGGGGCTCGTTATATCCATT 1381 ||||||| |||||||||||||||||| |||| ||||||||| |||||| |||||||| Sbjct 1026 GTCCCCTCAGCAGGAATCGAACCTGCATCTAGCGCTTAGGAGGCACTCGTTCTATCCATT 967 Query 1382 TAACTAAGAGGA 1393 ||||| ||||| Sbjct 966 GAACTATGAGGA 955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 210839839039764