Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq9250 379 8e-101 seq23830 206 1e-48 seq10080 197 5e-46 seq23194 176 2e-39 seq24598 167 9e-37 seq6074 161 4e-35 seq2464 109 2e-19 seq20301 100 1e-16 seq21415 84.2 9e-12 seq12243 82.4 3e-11 >seq9250 Length=1556 Score = 379 bits (420), Expect = 8e-101 Identities = 424/565 (75%), Gaps = 1/565 (0%) Strand=Plus/Plus Query 45347 CCACAGACCGCATCCCTGAAGCGGGCATTACGCTGGAAGCCCCAGACGTAGATGTTTGCC 45406 || || |||||||| | |||||| || | | ||||||||||||||||||| ||||| ||| Sbjct 2 CCGCACACCGCATCACGGAAGCGCGCCTCAGGCTGGAAGCCCCAGACGTAAATGTTCGCC 61 Query 45407 TGCTTCGGCGTCAGTTGAACGGGCGCATCATAGGTACGGGGCAGCCGGGACATCTTCGTC 45466 || |||||||||| | || || | ||| |||||||||| || ||||||| |||| || Sbjct 62 TGTTTCGGCGTCAACTTCACCGGTGGGTCAAAGGTACGGGGTAGTCGGGACACCTTCATC 121 Query 45467 AGGTCTCAGGATGTACTCAGTTTTCGCCTGCTGGTGGTCCGGCTGGGTACTCAGGGATCG 45526 || ||| ||||||||| || ||||| ||||||| ||||| | ||||| Sbjct 122 TGGCTCCAGCTTGTACTCAGCAACGGCGTGCTGCTGGTCCGCCTGGGAGCCCAGGGGCTT 181 Query 45527 GTCAGGCTCAGCCTTTCGGTTCACATAGACGTCACCGCACTCCTTGGCCGCCTGTTCCAA 45586 ||| || || ||| ||||| || || | ||| ||||| |||||||||||||| || | Sbjct 182 GTCGGGTTCGATCTTGCGGTTGACGTACATGTCGCCGCATTCCTTGGCCGCCTGCTCGTA 241 Query 45587 CAACTGGGCGGTCAGCGCTAGGTTCCTCATGGACTCGGCCTTTTCGGCCATCCGCCCCAG 45646 || |||||| |||||||||||||| | |||| ||||||||| || ||||| ||||| || Sbjct 242 CAGCTGGGCAGTCAGCGCTAGGTTGCGCATGTTCTCGGCCTTCTCAGCCATTCGCCCTAG 301 Query 45647 CGTTCGAAGCCGGAACGCCCGGTTGGCGATAGGGATCTCGGACGTCTCTTCGCGAAAGCG 45706 ||||||||||| || | ||| ||||| || ||||||| || || ||||| || || Sbjct 302 GCCGCGAAGCCGGAAAGCTCTGTTCGCGATGGGAATCTCGGCTGTTTCCTCGCGGAACCG 361 Query 45707 CTTGCGGGTGTCCTCGAACAGAGTCCGCCAGCGCTTGGCCAGGTCTCGGCCTGCGCTCTT 45766 |||||| ||||||||||||| | | |||||||||||| ||| | ||| | | ||| Sbjct 362 CTTGCGTGTGTCCTCGAACAAGGCCACCCAGCGCTTGGCTAGGCCCTTGCCGGAGTACTT 421 Query 45767 GGTCGGATCATGCGACTCGCACTGTTGGCGGCTCACCTCTATACCGAATTCTTCTCGGAC 45826 || ||||| |||| ||| ||| |||||| |||| | || | |||||||| |||| Sbjct 422 CGTGGGATCGTGCGTCTCCACCTGCTGGCGGGTCACTGCGATGCTGAATTCTTTCTGGAC 481 Query 45827 AGATGCCGCCACCTGTGCGGGGGTATCGAAACAGGCCAGGGCCTGCACGATGAAGGCTTT 45886 | | ||||||||| || | ||||| || |||| |||||| || || ||||| || Sbjct 482 GGCCTCTACCACCTGTG-AAGGCTGTCGAAGCACGCCAAGGCCTGAACAATAAAGGCCTT 540 Query 45887 CACCTCATTGTTCAGGACTGCCATA 45911 ||| || ||| | ||| |||||||| Sbjct 541 CACGTCGTTGCTGAGGGCTGCCATA 565 >seq23830 Length=533 Score = 206 bits (228), Expect = 1e-48 Identities = 218/287 (76%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 7282 GTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCC 7341 || ||||||||||| | || || ||| |||| | ||||| || | ||| | | ||| Sbjct 191 GTCAACAAAGTCATCATCGTCGGCAACCTCGGGCGCGACCCCGAGATGCGCACCTTCCCC 250 Query 7342 AACGGCAATGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACAAGCAG 7401 | |||| | ||| ||||| ||||| ||||||||| ||| ||||| |||||| | Sbjct 251 AGCGGCGACCAGGTCGCCAACGTCACCATCGCCACCACCGACCGCTGGCGCGACAAGAAC 310 Query 7402 ACCGGCCAGCAACAGGAACGCGCCGAGTTCCACCGCGTGGTGTTCTTCGGTCGCCTGGCG 7461 |||||| || | ||||| | |||||| |||||| | |||||| ||| || ||||| Sbjct 311 ACCGGCGAGAACAAGGAAGCCACCGAGTGGCACCGCATCGTGTTCAACGGCCGTCTGGCC 370 Query 7462 GAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAAGGCAGCCTGCGC 7521 ||||||| ||| |||||||||||||||| ||||||||||| || ||||||||||||||| Sbjct 371 GAGATCGTGGGCCAGTACCTGCGCAAGGGCTCCCAGGTCTATGTGGAAGGCAGCCTGCGC 430 Query 7522 ACCCGCAAGTGGCAGGCTCAGGACGGCCAGGACCGATACACCACCGA 7568 |||||||||||| | ||| ||||||||| || |||||| || Sbjct 431 ACCCGCAAGTGGACCGACCAGTCCGGCCAGGAAAAATTCACCACGGA 477 >seq10080 Length=1424 Score = 197 bits (218), Expect = 5e-46 Identities = 205/269 (76%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 44351 TTCAGCAGCATGGCGTTGACCGAGTTCACCCGGTCTTTGACGCTCGGGTTCTGGGTGTCC 44410 || || | ||||||| | |||| ||| | || || || || | |||||||| | ||| Sbjct 269 TTAAGGAACATGGCGCTCACCGCGTTGATGCGATCCTTCACACCGGGGTTCTGTGAGTCG 210 Query 44411 ACGATCACCGTGAATCCAGCTTTGCGCAGCAGGGACAGGTCCGACTCGCTCGCGTTCTTG 44470 || | || ||||| ||||| || ||||| ||||||||||||||||| ||||||||| Sbjct 209 ACCACAACGGTGAAACCAGCCTTCTTGAGCAGCGACAGGTCCGACTCGCTGGCGTTCTTG 150 Query 44471 CTACTGGTGTTCTGGCCGCTGGCATCGGGATAGACAGCTATGCCGTGGCCCGGGAATCGC 44530 || ||||||||||| | |||||| || || || || | | || ||| || | ||| ||| Sbjct 149 CTGCTGGTGTTCTGTCGGCTGGCGTCTGGGTACACGGAGACGCTGTGCCCTGAGAAACGC 90 Query 44531 GCCTTGATTCTCTCTATCATCTCAGGCGTATCGCGCACCGAGTGAAACTCATCCAGGGCC 44590 |||| || |||| ||||| |||||||| |||||| ||||||| ||||| ||||| ||| Sbjct 89 ACCTTTATCTTCTCGATCATGTCAGGCGTGTCGCGCCCCGAGTGGAACTCGTCCAGCGCC 30 Query 44591 AGGGGCAAGCCATTGCGCACGACGTAGAC 44619 || |||||||| | || || ||||| || Sbjct 29 AGCGGCAAGCCGTCACGGACCACGTATAC 1 >seq23194 Length=554 Score = 176 bits (194), Expect = 2e-39 Identities = 238/327 (73%), Gaps = 16/327 (5%) Strand=Plus/Minus Query 7285 AACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAAC 7344 ||||||||||| ||||| || ||| |||| ||||| |||||||| || | || | Sbjct 320 AACAAAGTCATCCTGGTCGGCAACCTCGGCAACGACCCAGAAACCCGTTATACGCAGGGC 261 Query 7345 GGCAATGCGGTGACCAACATCACCCTCGCCACCAGC-GAGAGCTGGAAGGACAAGCAGAC 7403 |||| ||| | ||| |||| ||| ||||||| | | | || ||||||||||| | Sbjct 260 GGCATGGCGATCACCCGGATCAGCCTGGCCACCACCAGCGTGC-GGAAGGACAAGGA--- 205 Query 7404 CGGCCAGCAACAGGAACGCGCCGAGTTCCACCGCGTGGTGTTCTTCGGTCGCCTGGCGGA 7463 |||| | || ||||||||| |||| | |||||||||||||||||||| || | || Sbjct 204 CGGCAACCAGCAGGAACGCACCGAATGGCACCGCGTGGTGTTCTTCGGCAAGCTCGGCGA 145 Query 7464 GATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAAGGCAGCCTGCGCAC 7523 ||||||||||||||||||||||||||| | ||| |||||||| ||| | | ||| Sbjct 144 GATCGCCGGCGAGTACCTGCGCAAGGGCAGCTCGGTGTACGTCGAGGGCTCCATCCGCTA 85 Query 7524 CCGCAAGT-GGCAGGCTCAGGACGGCCAGGACCGATACACCACCGAGGTAATCGTCGACA 7582 | ||||| | ||| |||||||| ||||| ||| ||||||| | |||| |||| Sbjct 84 CGACAAGTACACCGGC-CAGGACGGTCAGGAGAAGTACTCCACCGACATCATCGCCGAC- 27 Query 7583 TGCACGGACAGATGCAGATGCTTGGCG 7609 ||||||||||||| |||| Sbjct 26 --------GAGATGCAGATGCTCGGCG 8 >seq24598 Length=509 Score = 167 bits (184), Expect = 9e-37 Identities = 247/346 (71%), Gaps = 8/346 (2%) Strand=Plus/Minus Query 24441 GTCAGGCGGCGGACGCGCACCTGCCAGCCATTGGTGGCCGCCGGCAGGTCGATCCGGCGG 24500 ||||| ||||||| |||||||||||| | | || | || ||||||||||| |||||| Sbjct 492 GTCAGCCGGCGGATGCGCACCTGCCAC---TGGCTGCCGGCAGGCAGGTCGATGCGGCGG 436 Query 24501 GAACGCTCGTAGCGGGTGGTGGTCTTGCCATCGACGGCCTCGCGCAGCAC-CTCCTGATA 24559 |||||||| || |||||||||||||| || ||| ||| |||||| | |||| | Sbjct 435 CTGCGCTCGTACTGGCTGGTGGTCTTGCCACTGAAGGCATCGGTCAGCACGGTGCTGA-A 377 Query 24560 GGCGCCGCCGTCGGTGGCCAGATCTACGGCATATTCGATCCGGTACCCGCCGATGTTGCC 24619 | |||||||||||||| |||||| || || || ||||||||| || | ||| ||| Sbjct 376 CGGGCCGCCGTCGGTGGACAGATCCACCGCGTACATGATCCGGTAGCCTTCAGTGTCGCC 317 Query 24620 GTT---GGTGTCCTGCTGCTGGAGCGCTGGCCAGGCGAAGCGCAGGCGCACTGCGGAAAG 24676 ||| |||| || ||| | ||| ||| || ||||| | || || || || || Sbjct 316 GTTCTGAGTGTTGGTCTTCTGCAACGCCGGCACCGCAAAGCGGATACGGACGGCCGACAG 257 Query 24677 CTGGGTATTGCTCAGCGAGCGCACCCAGGGCGTATCGCTGCGCAACTCGACGTTGACGCT 24736 | || | | | | ||| ||| |||| ||||||||||| ||| || ||||||| Sbjct 256 GTCGGCACCGGATACGGTGCGTACCACCGGCGCATCGCTGCGCAGCTCAACATTGACGCC 197 Query 24737 GGTTTCGTTCTCAACGGCAGGGATGCCCGGGATGTAGTCCTGGTCC 24782 ||||||||| | || |||| ||| ||||| ||||||||| Sbjct 196 AACTTCGTTCTCGATGGAGGGGAAGCCGCTGATGTGCTCCTGGTCC 151 >seq6074 Length=2299 Score = 161 bits (178), Expect = 4e-35 Identities = 238/329 (72%), Gaps = 20/329 (6%) Strand=Plus/Plus Query 7285 AACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACATGCCCAA- 7343 ||||||||||| ||||| || || |||| |||||||| |||| |||| Sbjct 1914 AACAAAGTCATCCTGGTCGGCAATCTCGGCAACGACCCGGACGTGAAGTACA--CCCAGG 1971 Query 7344 -CGGCAATGCGGTGACCAACATCACCCTCGCCACCAGCGAGAG-CTGGAAGGACAAGCAG 7401 ||||| ||| | ||| ||||| ||| ||||||| | || | | | ||||||||| | Sbjct 1972 GCGGCATGGCGATCACCCGCATCAGCCTGGCCACCACC-AGCGTCCGCAAGGACAAGGAT 2030 Query 7402 ACCGGCCAGCAACAGGAACGCGCCGAGTTCCACCGCGTGGTGTTCTTCGGTCGCCTGGCG 7461 ||| | || ||||| ||| |||| | |||||||||||||||||||| || | Sbjct 2031 ---GGCAACCAGCAGGAGCGCACCGAATGGCACCGCGTGGTGTTCTTCGGCAAGCTCGGC 2087 Query 7462 GAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAAGGCAGCCTGCGC 7521 ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| Sbjct 2088 GAGATCGCCGGCGAGTACCTGCGCAAGGGCAGCTCGGTCTACGTCGAAGGCAGCCTGCGC 2147 Query 7522 ACCCGCAAGT-GGCAGGCTCAGGACGGCCAGGACCGATACACCACCGAGGTAATCGTCGA 7580 | ||||| | ||| ||||||||| ||| ||| ||||||| | |||| || Sbjct 2148 TACGACAAGTACACCGGC-CAGGACGGCGTGGAGAAGTACTCCACCGACATCATCGCCG- 2205 Query 7581 CATGCACGGACAGATGCAGATGCTTGGCG 7609 ||| | ||||||||||| |||| Sbjct 2206 -ATG-------AAATGCAGATGCTGGGCG 2226 >seq2464 Length=4980 Score = 109 bits (120), Expect = 2e-19 Identities = 124/164 (76%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 53678 TCATCGCGGTACACGAACATGACGATGTCGGCGTCTTGCTCAATGGCGCCGGACTCGCGC 53737 ||||||||||| | |||||||| ||||||||| || ||||| ||||| || || |||||| Sbjct 4499 TCATCGCGGTAGATGAACATGATGATGTCGGCATCCTGCTCGATGGCACCCGATTCGCGC 4440 Query 53738 AGGTCGCTGAGGACCGGACGCTTGTCGGGGCGAGACTCGCACC-CTCGGTTTAGCTGGCA 53796 |||||| | | || |||||||||| ||| ||| |||| ||||| |||||| | Sbjct 4439 AGGTCGGACATCATGGGGCGCTTGTCGGTGCGCTGCTC-CACCGAACGGTTGAGCTGGGA 4381 Query 53797 GAGGGGAAGCACAGGACACCCAATCTCCCTTGCCAACAGCTTCA 53840 |||| || ||| || ||| | |||| | |||| || ||||| Sbjct 4380 CAGGGCAATCACCGGGCACTGCAACTCCTTGGCCAGCATCTTCA 4337 >seq20301 Length=662 Score = 100 bits (110), Expect = 1e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 53636 ATTTCGCCGATACCCTTCCTGTCGCTGTTCGGGAAATAGACTTCATCGCGGTACACGAAC 53695 ||||| |||| || ||| |||||||||| | |||||| ||||| || || | |||| Sbjct 476 ATTTCTGCGATGCCTTTCAGGTCGCTGTTCTCGTGATAGACCTCATCACGATAGATGAAC 417 Query 53696 ATGACGATGTCGGCGTCTTGCTCAATGGCGCCGGACTCGCGCAGGTCGCTGAGGACCGGA 53755 |||| | |||||| || ||||| |||| ||| || || ||||| ||| | ||||||| Sbjct 416 ATGATTAAGTCGGCATCCTGCTCGATGGAGCCCGATTCACGCAGATCGGAGTTGACCGGA 357 Query 53756 CGCTTGTCGG 53765 |||||||||| Sbjct 356 CGCTTGTCGG 347 >seq21415 Length=617 Score = 84.2 bits (92), Expect = 9e-12 Identities = 133/190 (70%), Gaps = 3/190 (2%) Strand=Plus/Plus Query 24596 GATCCGGTACCCGCCGATGTTGCCGTT---GGTGTCCTGCTGCTGGAGCGCTGGCCAGGC 24652 ||||||||| || || | | ||||| ||||| | || ||| | ||| ||| || Sbjct 10 GATCCGGTAGCCTTCGGTATCACCGTTCTCGGTGTTCGTCTTCTGCAACGCCGGCACCGC 69 Query 24653 GAAGCGCAGGCGCACTGCGGAAAGCTGGGTATTGCTCAGCGAGCGCACCCAGGGCGTATC 24712 ||||| | || || || || || | || | || | ||||||| |||| ||| Sbjct 70 AAAGCGGATACGGACGGCTGACAGATCGGCACCTGACACGGTGCGCACCACCGGCGCATC 129 Query 24713 GCTGCGCAACTCGACGTTGACGCTGGTTTCGTTCTCAACGGCAGGGATGCCCGGGATGTA 24772 |||||||| |||||||||||| | | ||||||||| | || |||| ||| ||||| Sbjct 130 GCTGCGCAGCTCGACGTTGACCCCGACTTCGTTCTCGATGGAGGGGAAGCCGCTGATGTG 189 Query 24773 GTCCTGGTCC 24782 |||||||||| Sbjct 190 GTCCTGGTCC 199 >seq12243 Length=1175 Score = 82.4 bits (90), Expect = 3e-11 Identities = 148/212 (70%), Gaps = 11/212 (5%) Strand=Plus/Minus Query 29811 CGGCAGGGAAGCCGCCGAAGGGCAGTTGGTTGCCTTCACCGAAGCGCGGGATGCAACCG- 29869 |||| ||||||||||| ||||||| | ||| | | ||||||||| | |||||| | Sbjct 263 CGGCGGGGAAGCCGCCATAGGGCAGCGGCTTGTCCTGGCCGAAGCGCAGCTTGCAACTGC 204 Query 29870 GTGCCCAGGCAGCCATCACACTCGTCCCGGGCTGGGTCATCGGTGGGGTTGCCGTCGATG 29929 || ||| ||| || | |||| ||| || || || || || |||||| | ||||| || Sbjct 203 GTACCC-GGCCGC---CGCACTGGTCACGTGCCGGATCGTCAGTGGGGACGTCGTCGCTG 148 Query 29930 TCG---AAGTACGGGCCGGTGTAGCCGCAGTCGGGCCCGCGGTACCCGCCCGTCATCGCC 29986 ||| | || ||| |||||||||||| | ||||| || |||||| || | | Sbjct 147 TCGGCCACCGCTGGACCGTTGTAGCCGCAGTACGCGCCGCGATAGCCGCCCCGCACCAGC 88 Query 29987 CAGTGGCACA---GGGTGGTCATCTGCCGGCC 30015 ||| ||||| || | | ||||||| ||| Sbjct 87 CAGCCGCACATGCCGGCGATGATCTGCCTGCC 56 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194736981305358