Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028672.1 Length=149732 Score E Sequences producing significant alignments: (Bits) Value seq2869 95.1 1e-14 seq15331 87.8 2e-12 >seq2869 Length=4376 Score = 95.1 bits (104), Expect = 1e-14 Identities = 167/238 (70%), Gaps = 4/238 (2%) Strand=Plus/Plus Query 16724 GCGATCGCATTAATGGTCAAGTCCCGGCGGGCCAAATCCTCTTCGATGGTCACATCTGG- 16782 || || ||||| ||||||| ||| || ||||||| ||||| || | || ||||| || Sbjct 799 GCCATGGCATTGATGGTCAGGTCGCGCCGGGCCAGATCCTGCTCCAGCGTGACATCGGGC 858 Query 16783 GCTGAACATCACCTCGAAATCGTGGTATCCTGCGCCAGTTGAACGCTCGGTACGGGCCAG 16842 || | | ||| ||||| | |||| || ||| | ||||||||||| ||||| Sbjct 859 GCCGC-CTGCACGACGAAACCCCGGTACCCCAGGCCGCTCTTGCGCTCGGTACGCGCCAG 917 Query 16843 GGCGTACTCTTCCTTGGTCTCAGGATGCAGGTAAACTGGGAA-TGCGGCACCGACTTGCT 16901 || || || || | ||||| ||||| ||| | || ||||| | | || || ||| || Sbjct 918 CGCATATTCCTCGTGCGTCTCGGGATGGAGGAAGACCGGGAAGTCCCGC-CCCACTGGCA 976 Query 16902 CGAAGCCGAGTGCCATCATCTCTTCGTGGGTGGAGCCGACCACAACGTAGTCACGGTC 16959 |||||| | || ||| | |||| | |||| ||||||||| || |||| ||||| Sbjct 977 GAAAGCCGCGCGCGGACATTTGTTCGGGCGTGGCGCCGACCACCACCCAGTCGCGGTC 1034 >seq15331 Length=923 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 52356 CGGTGTATAGCGCAGTCTGGTAGCGCGAATGCTTTGGGAGCATTAGGTCGTTGGTTCGAG 52415 ||| ||||||||||||||||||||||| ||||||||||||| | |||| ||||||| Sbjct 195 CGGGGTATAGCGCAGTCTGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCGGGGGTTCGAA 136 Query 52416 TCCAACTACACCGACCAA 52433 ||| |||| |||||||| Sbjct 135 TCCCTCTACCCCGACCAA 118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478801603840480