Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028683.1 Length=177643 Score E Sequences producing significant alignments: (Bits) Value seq3391 136 4e-27 >seq3391 Length=3803 Score = 136 bits (150), Expect = 4e-27 Identities = 310/449 (69%), Gaps = 23/449 (5%) Strand=Plus/Plus Query 139151 CAGAAAGCATTGCATCAGTAGCAACCTTCACAGAACCATTTGTTCCATTTTTAAAGCCAA 139210 |||| |||| |||| || ||||| | | | || | ||| ||||||||||| |||| Sbjct 654 CAGACTGCATAGCATTGGTGGCAACAGTTAAACCGCCGTCTGTACCATTTTTAAAACCAA 713 Query 139211 C-GCACATAGGCAGGCCTGAAGCAATTTCACGGTGTGTCTGACTCTCGGTTGTACGAGCG 139269 | | || | || || |||| ||||||||||| || ||||||||||| ||||| || Sbjct 714 CTGGTGAT-GATAGACCAGAAGACATTTCACGGTGAGTTTGACTCTCGGTGGTACGTGCA 772 Query 139270 CCGATTGCGACCCAAGAGAA-AATACCTGTAAGATACTTAATCGTGAAT--GGGTCCAAC 139326 || ||||| ||| || | || | || || |||| | | || | || || | Sbjct 773 CCAATTGCAGACCATGAAATTAAGTCTTGATAG-TACTG--TGGAGAGTTAGGATCTAGT 829 Query 139327 ACTTCAGTCGCTAGTGGAAGGCCTAAGCTTAATAGTTCT-AAGCAA-AGTTCGCGAGCCA 139384 ||||||| || ||| || ||| || || || |||||| |||| ||| ||| Sbjct 830 GCTTCAGTTGCACATGGCAGACCTTT--TTCATTTAACTCAAGCAAGAGTTTACGA-CCA 886 Query 139385 TTTCG-AGCCCACGGTTTATGTCAAATGAGCCATTCAATTCTGGGTCGTTAATGAAACCT 139443 | || | || | |||| ||||||| |||||| |||||||| || || | |||| Sbjct 887 ATACGTAAACCTTTTTCGATGTTAAATGAGTCATTCATGTCTGGGTCATTGATTAGACCT 946 Query 139444 TTCCAACCTACAGTTGTTCTTGGTTTCTCAAAATAAACACGCATAACCA-AAAGAA--GA 139500 |||||||| | || || | |||||| |||||||||||||||||||| | | | || | Sbjct 947 TTCCAACCAATTGTAGTACGTGGTTTTTCAAAATAAACACGCATAACTAGATACAATGTA 1006 Query 139501 TTTGGAAATTGTT---TTTGTACTTCGGCTAAACGTTCGCCGTATTCGAGAGCAGCTTTA 139557 | | || || || || | |||| ||| || ||| | |||||| |||||||||| Sbjct 1007 TCTTTAACTTTTTCGCTTAGCACTT---TTAAGCGATCGGCATATTCGTGAGCAGCTTTC 1063 Query 139558 GGGTCATGAATTGAACAAGGGCCTACAAC 139586 ||||| ||||| || ||||| || | ||| Sbjct 1064 GGGTCGTGAATAGAGCAAGGACCAATAAC 1092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568077126679320