Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028696.2 Length=41338 Score E Sequences producing significant alignments: (Bits) Value seq18068 105 2e-18 >seq18068 Length=764 Score = 105 bits (116), Expect = 2e-18 Identities = 97/120 (81%), Gaps = 6/120 (5%) Strand=Plus/Plus Query 17111 TCCCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGTCCGGCGAGAA-CGA----CA 17165 ||||| ||||||||||||||| | |||| ||| |||| | || ||||| ||| || Sbjct 48 TCCCACGCCATTTCCAGTGCTCTGATGGCAAGTTTGCTCGCAGGTGAGAATCGAATTTCA 107 Query 17166 TGGCCCAGCCCACTGG-TTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAG 17224 | ||||| ||| |||| |||||| ||||||||||||||||||||| | || ||||||||| Sbjct 108 TTGCCCACCCCTCTGGGTTTTCTGGCGAACAGGTCGAGAACAACGACAAGATACGCCCAG 167 Score = 105 bits (116), Expect = 2e-18 Identities = 97/120 (81%), Gaps = 6/120 (5%) Strand=Plus/Plus Query 39736 TCCCATGCCATTTCCAGTGCTTTCATGGTAAGCCTGCTGTCCGGCGAGAA-CGA----CA 39790 ||||| ||||||||||||||| | |||| ||| |||| | || ||||| ||| || Sbjct 48 TCCCACGCCATTTCCAGTGCTCTGATGGCAAGTTTGCTCGCAGGTGAGAATCGAATTTCA 107 Query 39791 TGGCCCAGCCCACTGG-TTTTCTTGCGAACAGGTCGAGAACAACGGCGAGGTACGCCCAG 39849 | ||||| ||| |||| |||||| ||||||||||||||||||||| | || ||||||||| Sbjct 108 TTGCCCACCCCTCTGGGTTTTCTGGCGAACAGGTCGAGAACAACGACAAGATACGCCCAG 167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132104225093400