Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028762.1 Length=161989 Score E Sequences producing significant alignments: (Bits) Value seq3391 98.7 1e-15 >seq3391 Length=3803 Score = 98.7 bits (108), Expect = 1e-15 Identities = 93/118 (79%), Gaps = 3/118 (3%) Strand=Plus/Plus Query 129338 CAATTCTTAACCCTTCATCAATATTAAAAGAACCATTTAATTCTGGGTCGTTGACTAGGC 129397 |||| | ||| |||| || || ||||| || |||| | |||||||| |||| ||| | Sbjct 885 CAATACGTAAACCTTTTTCGATGTTAAATGAGTCATTCATGTCTGGGTCATTGATTAGAC 944 Query 129398 CTTTCCAACCTACAGTTGTGCGTGGTTTTTCAAAATAAACCCGCATAACCAATAGATA 129455 |||||||||| | || || |||||||||||||||||||| |||||||| |||||| Sbjct 945 CTTTCCAACCAATTGTAGTACGTGGTTTTTCAAAATAAACACGCATAAC---TAGATA 999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518006579779560