Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028765.1 Length=142348 Score E Sequences producing significant alignments: (Bits) Value seq3714 95.1 1e-14 >seq3714 Length=3526 Score = 95.1 bits (104), Expect = 1e-14 Identities = 210/307 (68%), Gaps = 11/307 (4%) Strand=Plus/Plus Query 125998 TGGAGACCCTGTTAAGATTATTTGTGGAGACCCTGACGCAGATACTGAGTA--TGAACGT 126055 ||| ||||| ||||| ||||||||||| || || || || || | | | | | | | Sbjct 1999 TGGCGACCCAGTTAAAATTATTTGTGGTGATCCAGATGCCGA-AGTCGGCAGCCCAGCTT 2057 Query 126056 --AAAGGTGCTGTAGAGGTGCTT-TGGGATACTTTTGGAGGTACTGAAACTGAAAAAGGA 126112 ||||| || || || ||||| ||||| ||||| ||||| || || |||| Sbjct 2058 ACAAAGGCGCGGTTGA-ATGCTTATGGGAAGTGTTTGGCGGTACAACGACAGACCAAGGC 2116 Query 126113 TATAAAGTACTAGATGAGCATGTAGGATTAATTTATGGGGACTCTATTAACTATGAGCGT 126172 ||||||||||| |||||| ||| || |||||||| || ||||| |||| | || ||| Sbjct 2117 TATAAAGTACTGAATGAGCGTGTCGGCTTAATTTACGGTGACTCGATTACCCTAGACCGT 2176 Query 126173 GCACATCAAATTTGTGAAGGATTAAAAGAAAAAGGTTTTGCAAGTATTAACGTTGTATTA 126232 || || | |||| |||||| | ||| ||||||||||| | ||| | || || Sbjct 2177 GCGCAGCGCATTTTAGAAGGACTTGAAGCCAAAGGTTTTGCTTCAAACAACTTGGTGTTT 2236 Query 126233 GGTGTAGGTAGTTT--CTCTTACCAATTTAATACTCGTGATACTCATGGCTTTGCAATCA 126290 || | || ||||| | || | | ||| ||||| ||||| ||| ||||| | | Sbjct 2237 GGGATTGGCAGTTTTACCTATAACTACTTA--ACTCGCGATACCTTTGGATTTGCTGTGA 2294 Query 126291 AAGCAAC 126297 |||| || Sbjct 2295 AAGCGAC 2301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 455183300639520