Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028768.1 Length=49714 Score E Sequences producing significant alignments: (Bits) Value seq13261 100 9e-17 seq7592 87.8 6e-13 seq799 87.8 6e-13 seq17901 86.0 2e-12 seq1439 82.4 2e-11 >seq13261 Length=1077 Score = 100 bits (110), Expect = 9e-17 Identities = 78/92 (85%), Gaps = 1/92 (1%) Strand=Plus/Minus Query 36080 CTGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTACC 36139 |||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 707 CTGGTCGGGGTAGAGGGATTCGAACCCCCGACCCTCTGCTCCCAAAGCAGATGCGCTACC 648 Query 36140 TGACTGCGCTACACTCCGAAG-GTGCCGGGCG 36170 |||||||||| || |||| | | ||| |||| Sbjct 647 AGACTGCGCTATACCCCGACGAGGGCCCGGCG 616 >seq7592 Length=1889 Score = 87.8 bits (96), Expect = 6e-13 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 36081 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTACCT 36140 ||||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct 1703 TGGTCGGAGCGGCGGGATTCGAACTCGCGACCCTCTGCTCCCAAAGCAGATGCGCTACCA 1644 Query 36141 GACTGCGCTACACTCCGA 36158 | ||||||||| |||||| Sbjct 1643 GGCTGCGCTACGCTCCGA 1626 >seq799 Length=11159 Score = 87.8 bits (96), Expect = 6e-13 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 36081 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTACCT 36140 ||||||||| |||||||||| ||||||||||||||||||||||||||||||| Sbjct 3641 TGGTCGGAGCGGCGGGATTCGAACTCGCGACCCTCTGCTCCCAAAGCAGATGCGCTACCA 3582 Query 36141 GACTGCGCTACACTCCGA 36158 | ||||||||| |||||| Sbjct 3581 GGCTGCGCTACGCTCCGA 3564 >seq17901 Length=771 Score = 86.0 bits (94), Expect = 2e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 36081 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTACCT 36140 |||||||||| ||||||||| ||||||||| ||||||| ||||||||||||| Sbjct 299 TGGTCGGAGTGGAGAGATTCGAACTCCCGACCCTCTGGTCCCAAACCAGATGCGCTACCA 358 Query 36141 GACTGCGCTACACTCCG 36157 ||||||||||||||||| Sbjct 359 GACTGCGCTACACTCCG 375 >seq1439 Length=7353 Score = 82.4 bits (90), Expect = 2e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 36081 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTACCT 36140 ||||||||| | ||||||||||||||| ||||| ||| ||||||| ||| ||| ||||| Sbjct 7169 TGGTCGGAGCAGTAGGATTCGAACCTACGACCCCCTGGTCCCAAACCAGGTGCACTACCA 7110 Query 36141 GACTGCGCTACACTCCGA 36158 | ||| |||| |||||| Sbjct 7109 GGCTGTGCTATGCTCCGA 7092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158896113456168