Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028770.1 Length=59878 Score E Sequences producing significant alignments: (Bits) Value seq15580 122 3e-23 seq7272 114 5e-21 >seq15580 Length=904 Score = 122 bits (134), Expect = 3e-23 Identities = 248/355 (70%), Gaps = 15/355 (4%) Strand=Plus/Plus Query 5822 ACGACCTGACCGTCTCCACCGGCCCAGCAGGGACGGGGAAGACCTTCCTGGCCATCCAC- 5880 ||||| | ||| || || |||||| || ||||| || ||||||| |||||| || | Sbjct 543 ACGACATCACCTTCGGCATCGGCCCCGCCGGGACCGGCAAGACCTACCTGGCGGTCGCCT 602 Query 5881 -CACGGCCTGCGCCTGCTGGAGGCCGGGGAGATCCAGCGCCTCGTCATCACCCGGCCCGC 5939 | ||| | || ||||||| | | | | || ||| |||| |||| || || || Sbjct 603 GCGCGGTCGATGC--GCTGGAGCGCAGCAACGTGCAACGCATCGTGCTCACGCGCCCGGC 660 Query 5940 CGTTGAGGCAGATGAGAAGCTCGGCTTCCTGCCCGGCACTGTGGACG-AGAAGATGGCAC 5998 ||| ||||| | ||| || ||||||||||| ||| || ||| ||||| ||| | Sbjct 661 CGTGGAGGCCGGCGAGCGCCTGGGCTTCCTGCCGGGCGACCTG-ACGCAGAAGGTGGACC 719 Query 5999 CCTACCTCACCCCGATGCTGGACGCGGTGATCGACCTGGTCGGCC-CGACGA--TGACGA 6055 | ||||| |||| || |||||| || ||||||| | || |||| | || || Sbjct 720 CGTACCTGCGCCCGCTGTACGACGCGCTGTACGACCTGATGGGTTACGACAAGGTGCAGA 779 Query 6056 AGCGCCTCCTCGAGTCGCGCCA-GCTGGAGGTCGCCCCGCTGGCCTACATGCGAGGCCGG 6114 || || | ||||| ||| | ||| ||| ||||||||||||||| |||||| || || Sbjct 780 AG-GCGT--TCGAG-CGCAACGCGCTCGAGATCGCCCCGCTGGCCTTCATGCGCGGGCGC 835 Query 6115 ACGTTCAACGACACGTACATCGTCGCTGACGAGATGCAGAACGCCAC-CCCGCGC 6168 ||| ||||| || | | |||| || |||||| ||||||| |||| |||| || Sbjct 836 ACGCTCAACAACGCCTTCATCATCCTGGACGAGGCGCAGAACACCACGCCCGAGC 890 >seq7272 Length=1957 Score = 114 bits (126), Expect = 5e-21 Identities = 265/389 (68%), Gaps = 14/389 (4%) Strand=Plus/Minus Query 5822 ACGACCTGACCGTCTCCACCGGCCCAGCAGGGACGGGGAAGACCTTCCTGGCCATCCACC 5881 ||||| | ||| || || |||||| || || || || ||||||| ||||||| | | Sbjct 533 ACGACATCACCTTCGGCATCGGCCCGGCCGGCACCGGCAAGACCTACCTGGCCGTGGCCT 474 Query 5882 ACGGCCTGCGCCTGCTGGAGGCCGGGGAGATCCAGCGCCTCGTCATCACCCGGCCCGCCG 5941 || | || | ||||||| | | | | |||||| |||| |||| || || |||| Sbjct 473 GCGCCGTGGACGCGCTGGAGCGCAGCGCCGTGCAGCGCATCGTGCTCACGCGCCCGGCCG 414 Query 5942 TTGAGGCAGATGAGAAGCTCGGCTTCCTGCCCGGCACTGTGGACG-AGAAGATGGCACCC 6000 | ||||| | ||| || ||||||||||| ||| | |||| ||||| ||| || Sbjct 413 TGGAGGCGGGCGAGCGCCTGGGCTTCCTGCCGGGCGACCT-GACGCAGAAGGTGGACCCG 355 Query 6001 TACCTCACCCCGATGCTGGACGCGGTGATCGACCTGGTCGGC-CCGACGATG-ACGAAGC 6058 ||||| |||| || |||||| || |||||| | ||| ||| | | | || Sbjct 354 TACCTGCGCCCGCTGTACGACGCGCTGTACGACCTCATGGGCTACGAGAAAGTGCAAAAG 295 Query 6059 GCCTCCTCGAGTCGCGCCA---GCTGGAGGTCGCCCCGCTGGCCTACATGCGAGGCCGGA 6115 |||| |||| |||| | ||||||| |||| |||||||||| |||||| || || | Sbjct 294 GCCT--TCGA---GCGCAATGTGCTGGAGATCGCGCCGCTGGCCTTCATGCGCGGGCGCA 240 Query 6116 CGTTCAACGACACGTACATCGTCGCTGACGAGATGCAGAACGCCAC-CCCGCGCCAGACC 6174 || | ||| || | | | || || |||||| ||||||| |||| |||| | |||| Sbjct 239 CGCTGAACAACGCCTTCGTCATCCTGGACGAGGCGCAGAACACCACGCCCGAG-CAGATG 181 Query 6175 GCGCTGCTGGTGACCCGCCTGGGCTTCGG 6203 | || | | |||||| | || ||||| Sbjct 180 AAGATGTTCCTCACCCGCATCGGATTCGG 152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191407187157120