Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq16087 87.8 2e-12 seq3711 86.0 7e-12 seq2848 86.0 7e-12 seq23842 82.4 9e-11 >seq16087 Length=871 Score = 87.8 bits (96), Expect = 2e-12 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 125471 CCGGAAGTTCGCATTGAAGGCGGTCAGCATCTTAATGTCAATGTTCTGAATCGTGAAACG 125530 || ||||| ||| ||||||| |||||||| || || || || || ||| ||| |||||| Sbjct 116 CCAGAAGTGCGCGTTGAAGGTGGTCAGCACCTGAACGTTAACGTGCTGCGTCGCGAAACG 57 Query 125531 CTTCAAGATGCAGTAAAACATCCTGAAAAATATCCTCAACTGACCATTCGTGTTTC 125586 || || || || | || ||||||||||| || || |||||||||||||| || Sbjct 56 CTGATGGACGCCGTTGAGCACCCTGAAAAATACCCACAGCTGACCATTCGTGTGTC 1 >seq3711 Length=3527 Score = 86.0 bits (94), Expect = 7e-12 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 122093 ATGCGGTAGTAACTCAGTTGGTAGAGTGCCGTCCTTCCAAGTCGGATGTCGCGAGTTCGA 122152 |||||| |||| |||||||||||||| || ||||||||| || |||||||||||||| Sbjct 2489 ATGCGGAAGTAGCTCAGTTGGTAGAGCTCCAGCCTTCCAAGCTGGTTGTCGCGAGTTCGA 2548 Query 122153 ATCTCGTCTGCCGCTCCAAA 122172 ||||||| |||||| ||| Sbjct 2549 GCCTCGTCTTCCGCTCTAAA 2568 >seq2848 Length=4404 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 122094 TGCGGTAGTAACTCAGTTGGTAGAGTGCCGTCCTTCCAAGTCGGATGTCGCGAGTTCGAA 122153 ||||| |||| |||||||||||||| | | ||||||||| | ||||||||||||||| Sbjct 4052 TGCGGGAGTAGCTCAGTTGGTAGAGCGGCAGCCTTCCAAGCTGCATGTCGCGAGTTCGAC 4111 Query 122154 TCTCGTCTGCCGCTCCA 122170 ||||||| |||||||| Sbjct 4112 CCTCGTCTCCCGCTCCA 4128 >seq23842 Length=532 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 122094 TGCGGTAGTAACTCAGTTGGTAGAGTGCCGTCCTTCCAAGTCGGATGTCGCGAGTTCGAA 122153 ||||| |||| |||||||||||||| | | ||||||||| | ||||||||||||||| Sbjct 456 TGCGGAAGTAGCTCAGTTGGTAGAGCGTCAGCCTTCCAAGCTGAATGTCGCGAGTTCGAC 515 Query 122154 TCTCGTCTGCCGCTC 122168 ||||||| |||||| Sbjct 516 CCTCGTCTTCCGCTC 530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582477126816200