Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028809.1 Length=58637 Score E Sequences producing significant alignments: (Bits) Value seq2904 271 3e-68 seq13677 170 7e-38 seq2903 136 1e-27 seq3180 86.0 2e-12 >seq2904 Length=4329 Score = 271 bits (300), Expect = 3e-68 Identities = 450/640 (70%), Gaps = 41/640 (6%) Strand=Plus/Minus Query 56075 GTGCTGCAGATAGCGGAGCGCGAGGGCGTCAACGTCGGCGTGCGCCTGCCGGCCTCCGTG 56134 |||||| || ||| |||||| || | ||| | |||||||||||||| ||| |||| Sbjct 621 GTGCTGGAGCGCGCGAGGCGCGACGGGCTGAACCTGGGCGTGCGCCTGCCCGCCGACGTG 562 Query 56135 ATGGTGCTCGACGTCGACCCCCGCAACTTCCCCGAGGGCCGCGACTCCCTGGCCGAGCTC 56194 | ||| | ||||| ||||| ||||||||||| | ||| |||||| ||||||||||| Sbjct 561 GTCGTGGTGGACGTGGACCCGCGCAACTTCCCGGCGGGGCGCGACAGTCTGGCCGAGCTG 502 Query 56195 GTCGCTGATGCTGGGCTGGACCTGAGCCTTGCCCCCCATACGGTGACCGGCTCC--GG-- 56250 | || | || ||| || | || || || ||||||| | || Sbjct 501 GCTGCCGCCTTCGGCCTGCCGCTCACGTCGGCACCGCACGTCCTGACCGGTAACCTGGAA 442 Query 56251 -----CGGGCACCACTACTGGTTCACCAAGCCGGC---CGACGTGTCCCTGCTCGACACG 56302 ||| || |||| || ||| |||||| || || |||| ||||| |||| Sbjct 441 CACCCCGGCCATCACTTCTACTTCCGCAAGCCCGCGGGCGCCGTG---CTGCTGGACAGC 385 Query 56303 CTCGAGGCCTACGCGGGCGTGGAGTTCAAGTCGCTCGGCCGCCAGGTCGTCGCGGCCGGC 56362 | || | | ||||||||| |||||||||||||||||||||||||||||||| | ||| Sbjct 384 GTGGACGGTTTCGCGGGCGTCGAGTTCAAGTCGCTCGGCCGCCAGGTCGTCGCCCCTGGC 325 Query 56363 TCGGTCCACCCGAACGGCAGGCACTACGAGTGGGA-CGACCTTGCGCCGCCGCTGTCCGA 56421 || || ||||||| |||| | | ||| |||| | | || |||| |||||| | Sbjct 324 TCCGTGCACCCGACCGGCGGCCTGTACCGCTGGGCGCCAGATT-CGCCCCCGCTGCACCG 266 Query 56422 GATGCNNNNNNNNNCGGCCGTCCTCCTGCGCCTCTGCCGCCG-GCCCACCCGCGCGCACG 56480 |||| ||| || || |||| ||| | || | | | ||| || || Sbjct 265 CATGC---------CGGA--TCTGCCCGCGCGGCTG--GTCGAGGCGGCGCGCAGGC-CG 220 Query 56481 GCGAGGCAGCGGGCCTTGGT-------GAGCTCACCCCCGAGATGCTCGCCGCGACGCTC 56533 | |||| |||||||| || ||| ||||| ||||| ||||||||| |||| Sbjct 219 GAGAGGAAGCGGGCCACGGGCGCAGGCGAGATCACCGCCGAGCAGCTCGCCGCATCGCTG 160 Query 56534 GAGCAGCTGGACGCCGA-GGACTTCCAGGACCACGACACGTGGCGCGACCTGATGATGGC 56592 ||||| |||||| |||| |||||||| || |||||| | |||||||| ||||||||||| Sbjct 159 GAGCACCTGGAC-CCGACGGACTTCCGCGAGCACGACGCATGGCGCGAGCTGATGATGGC 101 Query 56593 CTGCCACCACGCCACCAACGGCGAAGGCCGGCAGGAGTTCATCGAGTGGTCCACTCAGGA 56652 ||||||||||||||| |||||| || ||||||||||||||||| ||| ||| || Sbjct 100 GTGCCACCACGCCACCGACGGCGCGGGGCGGCAGGAGTTCATCGACTGGAGCACGTCCGA 41 Query 56653 CCCCAAGTACCAGGACGACGCGTGGATCATCGGCCGCCGC 56692 ||| |||| | |||| ||| ||||||| ||||||||||| Sbjct 40 CCCGAAGTTCGCGGACCACGAGTGGATCGTCGGCCGCCGC 1 >seq13677 Length=1044 Score = 170 bits (188), Expect = 7e-38 Identities = 144/177 (81%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 4907 CTGTGGGACGCGGTCATGCGCTCCACCTGGGACTGGGCCGAGCCGGGCGTCCTGTTCATC 4966 ||||||||| | ||||| ||| || | |||| |||||||||||| || | | ||| Sbjct 641 CTGTGGGACATGATCATGGTCTCGACGTACGACTACGCCGAGCCGGGCTTCATCCTGATC 582 Query 4967 GACCGCATCAACGAGATGAACAACCTCCACTACTGCGAGACCATCGCGGCGACCAACCCG 5026 |||||| ||||||||||||||||| | | |||||||||||| |||||||||||| Sbjct 581 GACCGCGTCAACGAGATGAACAACAACTGGTGGTGCGAGACCATCCGCGCGACCAACCCG 522 Query 5027 TGCGGCGAGCAGCCGCTGCCACCGTTCGGCGCCTGCCTGCTCGGCTCCTTCAACCTG 5083 ||||||||||||||||| || |||| ||||||||||||||| ||||| |||||||| Sbjct 521 TGCGGCGAGCAGCCGCTACCGCCGTACGGCGCCTGCCTGCTGGGCTCGGTCAACCTG 465 Score = 82.4 bits (90), Expect = 3e-11 Identities = 142/201 (71%), Gaps = 4/201 (2%) Strand=Plus/Minus Query 4633 CAGCTCCGGCCCCATCTCCTTCATGGAGATTTTCGACGCAGTCTGCCGCTGCACGTCCTC 4692 || ||||||||| || ||||||||||| || | |||| | ||| | | |||||| Sbjct 1026 CACCTCCGGCCCGATGTCCTTCATGGATATCTACGACAAGATGTGCTTCACCGTGTCCTC 967 Query 4693 GTCCGGCCACCGGCGTGGCGCGCAGATGGGCGTCCTGCGCA-TCGACCACCCCGACATCT 4751 ||||| ||| || ||||||||||||||| | | || | || |||||| ||| || Sbjct 966 CGCCGGCGGCCGCCGCGGCGCGCAGATGGGCA-CGTTCGAAATCTCCCACCCGGACGTCA 908 Query 4752 TCGACTTCGTCCGCGCCAAGCAGAACGAGACCTTCCTGCGCGGCTTCAACATCTCCATCG 4811 |||||| |||||||||||| | || | ||||||| |||||| | || | | Sbjct 907 AGGACTTCATCCGCGCCAAGCGCGAAGACGGCCGCCTGCGCCAGTTCAACCTGTCGCT-G 849 Query 4812 CCG-TCACGGACGAGTTCATG 4831 | | |||| |||| |||||| Sbjct 848 CTGATCACCGACGGCTTCATG 828 >seq2903 Length=4332 Score = 136 bits (150), Expect = 1e-27 Identities = 126/160 (79%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 4903 CGAGCTGTGGGACGCGGTCATGCGCTCCACCTGGGACTGGGCCGAGCCGGGCGTCCTGTT 4962 ||||||||||||| | || ||| || ||| |||| |||||||||||| |||| || Sbjct 376 CGAGCTGTGGGACACCGTGATGACGTCGGCCTACGACTTCGCCGAGCCGGGCATCCTCTT 317 Query 4963 CATCGACCGCATCAACGAGATGAACAACCTCCACTACTGCGAGACCATCGCGGCGACCAA 5022 | | ||||||||||||||| |||||||| | |||||||||| |||||| || ||||| Sbjct 316 CCTGGACCGCATCAACGAGGACAACAACCTGCGCTACTGCGAGGACATCGCCGCCACCAA 257 Query 5023 CCCGTGCGGCGAGCAGCCGCTGCCACCGTTCGGCGCCTGC 5062 || |||||||||||||| ||||| | | |||| |||| Sbjct 256 TCCCTGCGGCGAGCAGCCCCTGCCGTCCTACGGCTGCTGC 217 >seq3180 Length=4021 Score = 86.0 bits (94), Expect = 2e-12 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Minus Query 578 GGCGGGCCGTGGACGGCTACGACGAGCCGGTCATCTACCAGGGCATGCC-GACCACGGTC 636 |||| |||| | |||||||||||||||||||||| ||||||| | ||| |||| | Sbjct 2373 GGCGCGCCGCGATCGGCTACGACGAGCCGGTCATCCACCAGGG-ACGCCTCGCCACCACC 2315 Query 637 GTCGACCCGGTTACGGGCGAGCAGCGCCAGCTCACCGTGCGGAAGTACAGCGAC 690 | |||||| || |||||| |||| | ||||||||| ||||| |||||||| Sbjct 2314 GCGGACCCGACGACCGGCGAGGAGCGGCCGCTCACCGTCAGGAAGCACAGCGAC 2261 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187437663105282