Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq6617 183 1e-41 seq6008 178 4e-40 seq21255 174 5e-39 seq19878 161 3e-35 seq7953 154 5e-33 seq25480 113 1e-20 seq26503 104 7e-18 seq18790 95.1 4e-15 seq32224 80.6 9e-11 seq3028 80.6 9e-11 >seq6617 Length=2135 Score = 183 bits (202), Expect = 1e-41 Identities = 270/378 (71%), Gaps = 6/378 (2%) Strand=Plus/Minus Query 40041 TGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGGCCGAAGGTCC 40100 |||||||||||||| || |||| || || |||||| || ||||||||| Sbjct 864 TGTCCAGCACGCGGCCCACGTCGCGGATGGCCGCGCGCGCGGCCATGGTGCCGAAGGTGG 805 Query 40101 CGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGATGACCTCGCCGC 40160 ||||||| ||| |||| |||||| || | || || |||||| | ||| Sbjct 804 CGATCTGGCTGACGGCGTCGCGGCCGTACAGCTGCTTCACATAGTCGATGACGCGGTCGC 745 Query 40161 GAC--GCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAG 40218 | ||| | || |||||| | ||| | ||||||||||||||| |||||||| || || Sbjct 744 GGTTGGCCTGGCA--GAAGTCCACGTCGAAGTCGGGCATGGACACACGCTCGGGATTGAG 687 Query 40219 GAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTA 40278 ||| |||||||| | || || ||||| || || ||||| |||||| ||| ||| Sbjct 686 GAAACGCTCGAACAGCAGGTTGTATTCCAGCGGGTCCAGGTCCGTGATCTTGAGCACGTA 627 Query 40279 GGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGAC-CCACACGCCGTTCTCCT 40337 ||| |||||||| ||||| |||| || || || ||||| || ||| |||||| || Sbjct 626 GGCCACCAGCGAGCCGGCGCCCGATCCGCGGCCCGGACCCACGGGACA-GCCGTTGAGCT 568 Query 40338 TGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGA 40397 ||||||| ||||||||| | |||| ||||||||| ||| |||||||||| || || Sbjct 567 TGGCCCACTTGATGAAGTCACCCACGATGAGGAAGTAGCCCGGAAAGCCCATCTTGAGGA 508 Query 40398 TCATGTCGATCTCGTACT 40415 | || |||||||| ||| Sbjct 507 TGGTGCCGATCTCGAACT 490 Score = 127 bits (140), Expect = 7e-25 Identities = 215/310 (69%), Gaps = 6/310 (2%) Strand=Plus/Minus Query 39033 ACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGCCCGTACGCCG 39092 ||||||||| ||||||| |||||| | |||||| | ||||| | ||| ||| || | Sbjct 1875 ACTCGGCCGTGTAGTGCACCTTCAGCCAGGCCGTGTGATAGGCCAGCAGCGAGTAGGCGG 1816 Query 39093 CAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCT 39152 | | ||||| |||||||||| |||| || ||||| | | || ||| | ||| | | Sbjct 1815 CGGCGTGCGACTTGTTGAAGCCGTAGCCCGCGAACTTCTCCATCAGGTCGAAGACCTCGT 1756 Query 39153 GGATGGCGCTGTCCGAGTAG---CCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACT 39209 | || | ||| | | || ||| | ||| |||| ||||| || || | Sbjct 1755 CG---GCCTTTTCCTCGCTGATGCCCTGCTTGGCCGCGCCCTCGCGGAAGATCCCGCGGT 1699 Query 39210 CCTTGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTGGC 39269 | || ||| ||||| |||||||||||||||||| || |||| |||||||| || Sbjct 1698 GCATGACCATTTCCTCGACCTTCTTCTTGCCCATGGCACGGCGCAAGAGGTCGGCGCCGC 1639 Query 39270 CCAGGCTGTAGCCAGCGAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGA 39329 |||| |||||| | || | ||| || | || | ||||||||||||||||| |||| Sbjct 1638 CCAGCGAGTAGCCGCCCAGCACCTGGGCGGTCTGCATCACCTGCTCCTGGTAGACCATGA 1579 Query 39330 GCCCGTACGT 39339 |||||| || Sbjct 1578 TCCCGTAGGT 1569 >seq6008 Length=2324 Score = 178 bits (196), Expect = 4e-40 Identities = 190/251 (76%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 40174 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40233 |||||||||||| | ||||||||||||||| |||||||| |||||||| || ||||| | Sbjct 1035 GAAGTCGATGTCGAAGTCGGGCATGGACACCCGCTCGGGATTCAGGAAGCGTTCGAACAG 1094 Query 40234 GAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACC 40293 || || || ||| || || |||||||||||| ||| |||||| |||||||| || Sbjct 1095 CAGGTTGTACTGCAGCGGGTCCAGGTCGGTGATCTTGAGCGCGTAGGCCACCAGCGAGCC 1154 Query 40294 GGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAA 40353 ||| | || || || || || ||||| |||||||||||| ||||| ||||| Sbjct 1155 GGCACCGGACCCCCGTCCCGGCCCGACAGGGCAGCCGTTCTCCTTCGCCCACTGAATGAA 1214 Query 40354 GTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTA 40413 |||| | |||| |||||||||| ||||||||||||| || ||| || | | ||| | Sbjct 1215 GTCGCCCACGATCAGGAAGTAGCCGGGGAAGCCCATCTTGAGGATGGTGCCCAGTTCGAA 1274 Query 40414 CTGGAGCTGCT 40424 || ||| ||| Sbjct 1275 CTCCAGCCGCT 1285 Score = 118 bits (130), Expect = 3e-22 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 39172 GCCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTT 39231 |||| |||| ||||||||| ||||| || || | | ||||| |||||| ||| Sbjct 30 GCCTTTCTCGGCCGCTCCCTTGCGGAAGATCTCGCGGTGTTCGGCCATCTCCTCGGCCTT 89 Query 39232 CTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGAT 39291 |||||||||||||||||| ||||||| |||||| || ||||||||||| | || | Sbjct 90 CTTCTTGCCCATGGCCCGGCGCAGCATGTCGGCACCACCGAGGCTGTAGCCGCCCAGCAC 149 Query 39292 CTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGTACGT 39339 ||| || | || | ||||||||||||||| | |||| |||||| || Sbjct 150 CTGGGCGGTCTGCATCACCTGCTCCTGGTACACCATGATCCCGTAGGT 197 >seq21255 Length=623 Score = 174 bits (192), Expect = 5e-39 Identities = 234/324 (72%), Gaps = 4/324 (1%) Strand=Plus/Minus Query 40090 GCCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGAT 40149 |||| |||| |||||| ||| ||| ||||||||| | ||||| ||| Sbjct 393 GCCGTAGGTGATGATCTGGCTGACGCGTTCGCGCCCGTACTTGCGCGCAACGTAGTCGAT 334 Query 40150 GACCTCGCCGCGACGCCGGTCATC--GAAGTCGATGTCAACGTCGGGCATGGACACGCGC 40207 |||||| |||| || | ||| |||||||||||| | ||||||||| |||||||| Sbjct 333 CACCTCGTCGCGGCG--GTCCATGCAGAAGTCGATGTCGAAGTCGGGCATCGACACGCGT 276 Query 40208 TCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATC 40267 |||||||||||||| |||||||| | || || | ||| || || |||||||||||| Sbjct 275 TCGGGGTTCAGGAAGCGCTCGAACAGCAGGTTGTACGGCAGCGGGTCCAGGTCGGTGATC 216 Query 40268 CCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACCGACCCACACG 40327 || | || |||||||| ||||| |||| || || || || |||| | | | Sbjct 215 TTCAGCGCCCATGCCACCAGCGAGCCGGCACCCGAACCACGGCCGGGGCCGATCGGAATG 156 Query 40328 CCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAAGCCC 40387 || | | |||| |||| |||||||||||| |||| |||||||||| ||||||||| Sbjct 155 CCCTGGTTCTTGCCCCACTGGATGAAGTCGGCCACGATCAGGAAGTAGCCGGGGAAGCCC 96 Query 40388 ATCTGGATGATCATGTCGATCTCG 40411 |||| |||||| ||| || |||| Sbjct 95 ATCTTGATGATGGTGTTGAGCTCG 72 >seq19878 Length=680 Score = 161 bits (178), Expect = 3e-35 Identities = 181/242 (75%), Gaps = 0/242 (0%) Strand=Plus/Plus Query 40174 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40233 |||||||| ||| | |||||||||||| || || || ||||| ||||| |||||||| | Sbjct 142 GAAGTCGACGTCGAAGTCGGGCATGGAAACACGTTCAGGGTTGAGGAAGCGCTCGAACAG 201 Query 40234 GAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGCGAACC 40293 || ||| |||| || ||||| ||||||||| || ||||| ||||||||||| Sbjct 202 CAGGTCGTAGGCCAGCGGGTCGAGATCGGTGATCTTCAGTACATAGGCCACCAGCGAACC 261 Query 40294 GGCTGCCGAGCCTCGCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAA 40353 || |||| || || || || || ||| || |||| | ||||||||| |||||| Sbjct 262 AGCACCCGAACCGCGGCCCGGGCCAACCGGTACATCGTTGTTCTTGGCCCACTTGATGAA 321 Query 40354 GTCGGCGACGACCAGGAAGTAGGACGGGAAGCCCATCTGGATGATCATGTCGATCTCGTA 40413 ||| || | ||||||||| |||||||||||||||||||| ||||| | |||| | Sbjct 322 GTCCATAACAATCAGGAAGTAACCGGGGAAGCCCATCTGGATGATGATGTCCAGCTCGAA 381 Query 40414 CT 40415 || Sbjct 382 CT 383 >seq7953 Length=1812 Score = 154 bits (170), Expect = 5e-33 Identities = 434/658 (66%), Gaps = 34/658 (5%) Strand=Plus/Plus Query 38711 TCGAACGCACCGGCCTTGATCAAGGACTCGATGGCGCGCTTGCTCACGGTGGCCTGAGTC 38770 |||| ||| ||||| |||||||| | || | || |||||| | | ||| | ||||| Sbjct 912 TCGAGCGCGCCGGCGTTGATCAACGCTTCCAGCGCACGCTTGTTGAGCCTGGAC-GAGTC 970 Query 38771 GCTGC-CTTCAAGAAGTCCGGCAGGGAGGTGAACTTCCCCCAGGCTTCCCGCAGT---TC 38826 | || ||| |||| || |||| | ||| | ||||| |||| || | || Sbjct 971 GACGCGCTTGCAGAAATCGAACAGGTCGCGGAATTGCCCCC---CTTCGCGACGCGCCTC 1027 Query 38827 GGCGAT-CTCGGCGACCATGCCCTCGCCCACGTTCTTCACGGCGGTCAGTCCGAAGCGGA 38885 | |||| ||| || | ||||| ||| ||| |||||| ||| ||| ||| |||||| Sbjct 1028 GACGATGCTCT-CGCATACGCCCTGGCCGACGCCCTTCACCGCGCCCAGGCCGTAGCGGA 1086 Query 38886 TCTCGCTCTCCCCGTTCGGGGTGAAGGAGCTGTTCGAGACCGACACGTCGGGCGGCAGGA 38945 | | | | || ||| ||| | || ||| |||||| ||||||| | Sbjct 1087 TGGAGTTGGCATCGGTCGCCACGAACATGAAGTCGGAGTGGTTCACGTCCGGCGGCATCA 1146 Query 38946 CCCGCAGGCCCATGCGCCGCGCCTCGCCGAGGTACGTGGCCATCTTGT---TCTTGTC-- 39000 | |||||| | || || || ||| ||||| | | ||| ||| | ||||||| Sbjct 1147 CGTTCAGGCCAAGGCCACGGGCTTCGTCGAGGAAGCCGACCACCTTCTCGGTCTTGTCCA 1206 Query 39001 -GTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGT 39059 |||| || | ||| || |||||| |||||| |||||||||| ||||||| Sbjct 1207 TGTCG------GACGACAGCGTCGCGGCCATGAACTCGGACGGGTAGTGCTTCTTCAGCC 1260 Query 39060 ACGCCGTGCGGTAGGCGATGAGCCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACC 39119 | ||||| |||| |||| ||| |||||| || | ||||| |||||||||| |||| | Sbjct 1261 AGGCCGTCTGGTACGCGACCAGCGAGTACGCGGCGGCGTGCGACTTGTTGAAGCCGTAGC 1320 Query 39120 CGGCGAAGGGTACGAGCACGTCCCACA------CCGCCTGGATGGCGCTGTCCGAGTAGC 39173 | ||||| | | || ||| | | | |||| ||| || || | || Sbjct 1321 CCGCGAACTTCTCCATCAGGTCGAAGATTTCGTCGGCCT---TGGGGCCATC---GACGC 1374 Query 39174 CTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTTCT 39233 | | || | || || | ||||| || || | |||||||| | | ||| || Sbjct 1375 CGCCCTTGGCTGCACCTTCGCGGAAGATCTCGCGGTGCTTGGCCATTTCGGCCGGCACCT 1434 Query 39234 TCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGATCT 39293 |||||||||| || || |||||||||||||| |||||| |||||| ||| ||||| Sbjct 1435 TCTTGCCCATCGCGCGGCGCAGCAGGTCGGCGCCGCCCAGCGAGTAGCCGCCGACGATCT 1494 Query 39294 GCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGTACGTCGGGTCCAGGAT 39351 ||||| || | |||||||||||||||| |||| ||||| ||| ||||| || Sbjct 1495 GCGCCATCTGCATGACCTGCTCCTGGTAGACCATGATGCCGTAGGTCTCTTCCAGCAT 1552 >seq25480 Length=481 Score = 113 bits (124), Expect = 1e-20 Identities = 164/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 40090 GCCGAAGGTCCCGATCTGTGCGACCTTGTCGGCCCCGTACTTCTCGGTGACGTACCGGAT 40149 |||| |||| |||||| ||| |||| |||||||| | |||||| ||| Sbjct 228 GCCGTAGGTGATGATCTGGCTGACGCGGTCGCGGCCGTACTTGCGCGCGACGTAGTCGAT 169 Query 40150 GACCTCGCCGCGACGCCGGTCATC--GAAGTCGATGTCAACGTCGGGCATGGACACGCGC 40207 ||| || |||| || | ||| |||||||||||| | ||||||||| |||||||| Sbjct 168 GACTTCATCGCGGCG--GTCCATGCAGAAGTCGATGTCGAAGTCGGGCATCGACACGCGT 111 Query 40208 TCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATC 40267 || || || ||||| |||||||| | ||||||| | ||| || || |||||||||| | Sbjct 110 TCCGGATTGAGGAAGCGCTCGAACAGCAGCCCGTACGGCAGCGGGTCCAGGTCGGTGACC 51 Query 40268 CCGAGGCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTCGCCCAGGACC 40317 || | ||||||||||| || || ||||||| || || ||||| Sbjct 50 TGCAGCGCCCACGCGACCAGCGAGCCCGCGCCCGAGCCGCGGCCGGGACC 1 >seq26503 Length=451 Score = 104 bits (114), Expect = 7e-18 Identities = 143/196 (73%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 40189 GTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCTCCAG 40248 ||||||||| |||||||| || ||||| ||||| || ||||||| ||| | || Sbjct 448 GTCGGGCATCGACACGCGTTCCGGGTTGAGGAAGCGTTCGAAGAGCAGCGAGAAACGTAG 389 Query 40249 TGGATCGAGGTCGGTGATCCCGAG-GCAGTAGGCGACCAGCGAACCGGCTGCCGAGCCTC 40307 ||||||| ||||| ||| || ||| |||||||||||||| || || |||| || | Sbjct 388 CGGATCGACATCGGTAATCGTCAGCGCA-TAGGCGACCAGCGATCCCGCACCCGAACCAC 330 Query 40308 GCCCAGGACCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCA 40367 | || || |||||| | | | || ||| ||||| |||||||||||| |||| | Sbjct 329 GACCGGGGCCGACCGGAATATCATGCTGCTTTGCCCATTTGATGAAGTCGGCAACGATAA 270 Query 40368 GGAAGTAGGACGGGAA 40383 | ||||| | |||||| Sbjct 269 GAAAGTA-GCCGGGAA 255 >seq18790 Length=730 Score = 95.1 bits (104), Expect = 4e-15 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 38929 CACGTCGGGCGGCAGGACCCGCAGGCCCATGCGCCGCGCCTCGCCGAGGTACGTGGCCAT 38988 ||| | ||||||||| || |||||| | | ||| | ||| ||||| | | ||| Sbjct 213 CACCTTGGGCGGCAGTACGGTCAGGCCGAGGTTGCGCACTTCGTCGAGGAAGCCGACCAC 154 Query 38989 CTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCCATGTACTCGGCCGGGTAGT- 39047 |||| ||| ||| | || | ||| |||||||||| ||||||||||||||| Sbjct 153 TTTGTCGGTGTTGTCCAGATCGGACGACAGCGTGGCCGCCATGAACTCGGCCGGGTAGTG 94 Query 39048 GCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGCCCGTACGCCGCAGAGTGCGCCTTGT 39107 |||| ||||| | || || ||||| || ||| |||| || || | ||||| ||||| Sbjct 93 GCGT-TTCAGCCATGCGGTCTGGTAGCTGACCAGCGCGTAGGCGGCGGCGTGCGACTTGT 35 Query 39108 TGAAGGCGTACCCGGCGAA 39126 ||||| |||| |||||||| Sbjct 34 TGAAGCCGTAGCCGGCGAA 16 >seq32224 Length=302 Score = 80.6 bits (88), Expect = 9e-11 Identities = 83/109 (76%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 39231 TCTTCTTGCCCATGGCCCGACGCAGCAGGTCGGCCTGGCCCAGGCTGTAGCCAGCGAGGA 39290 ||||||||||||| || |||||||||| || || ||| || ||||| || |||| Sbjct 162 TCTTCTTGCCCATCGCGCGACGCAGCAAATCCGCGCCGCCGAGCGAATAGCCGGCCAGGA 103 Query 39291 TCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGTACGT 39339 ||||||| |||| | |||||| ||||| |||| || || ||||| || Sbjct 102 TCTGCGCGGCCTGCATCACCTGTTCCTGATAGACGAAGATGCCGTAGGT 54 >seq3028 Length=4196 Score = 80.6 bits (88), Expect = 9e-11 Identities = 109/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 40169 TCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCG 40228 ||||| || || || || | |||||||||||||| || || || |||||||| ||||| Sbjct 1798 TCATCAAAATCAATATCGATATCGGGCATGGACACACGATCCGGATTCAGGAAACGCTCA 1739 Query 40229 AAGATGAGCCCGTGCTCCAGTGGATCGAGGTCGGTGATCCCGAGGCAGTAGGCGACCAGC 40288 || | | | | || || |||| | ||| || || | |||||||| || | | Sbjct 1738 AAAAGCAAATCATAAAGCATCGGGTCGATATTGGTAATTCCCAAACAGTAGGCCACAACC 1679 Query 40289 GAACCGGCTGCCGAGCCTCGCCCAGGACCGAC 40320 ||||| || ||||| ||||| |||||||| || Sbjct 1678 GAACCTGCAGCCGAACCTCGGCCAGGACCTAC 1647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160338704388786