Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028834.1 Length=48216 Score E Sequences producing significant alignments: (Bits) Value seq13261 96.9 1e-15 seq799 91.5 5e-14 seq7592 89.7 2e-13 seq17901 86.0 2e-12 seq1439 82.4 2e-11 >seq13261 Length=1077 Score = 96.9 bits (106), Expect = 1e-15 Identities = 68/78 (87%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 36269 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTGCCA 36328 ||||||| ||| ||||||||||| |||||||||||||||||||||||||||| ||| Sbjct 706 TGGTCGGGGTAGAGGGATTCGAACCCCCGACCCTCTGCTCCCAAAGCAGATGCGCTACCA 647 Query 36329 GACTGCGCTACACTCCGA 36346 |||||||||| || |||| Sbjct 646 GACTGCGCTATACCCCGA 629 >seq799 Length=11159 Score = 91.5 bits (100), Expect = 5e-14 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 36267 TTTGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTGC 36326 ||||||||||| |||||||||| |||||||||||||||||||||||||||| | Sbjct 3643 TTTGGTCGGAGCGGCGGGATTCGAACTCGCGACCCTCTGCTCCCAAAGCAGATGCGCTAC 3584 Query 36327 CAGACTGCGCTACACTCCGA 36346 ||| ||||||||| |||||| Sbjct 3583 CAGGCTGCGCTACGCTCCGA 3564 >seq7592 Length=1889 Score = 89.7 bits (98), Expect = 2e-13 Identities = 69/82 (84%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 36269 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTGCCA 36328 ||||||||| |||||||||| |||||||||||||||||||||||||||| ||| Sbjct 1703 TGGTCGGAGCGGCGGGATTCGAACTCGCGACCCTCTGCTCCCAAAGCAGATGCGCTACCA 1644 Query 36329 GACTGCGCTACACTCCGAAAAC 36350 | ||||||||| |||||| ||| Sbjct 1643 GGCTGCGCTACGCTCCGACAAC 1622 >seq17901 Length=771 Score = 86.0 bits (94), Expect = 2e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 36269 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTGCCA 36328 |||||||||| ||||||||| ||||||||| ||||||| |||||||||| ||| Sbjct 299 TGGTCGGAGTGGAGAGATTCGAACTCCCGACCCTCTGGTCCCAAACCAGATGCGCTACCA 358 Query 36329 GACTGCGCTACACTCCG 36345 ||||||||||||||||| Sbjct 359 GACTGCGCTACACTCCG 375 >seq1439 Length=7353 Score = 82.4 bits (90), Expect = 2e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 36269 TGGTCGGAGTACTAGGATTCGAACCTAGGACCCTCTGCTCCCAAAGCAGATGCGCTGCCA 36328 ||||||||| | ||||||||||||||| ||||| ||| ||||||| ||| ||| || ||| Sbjct 7169 TGGTCGGAGCAGTAGGATTCGAACCTACGACCCCCTGGTCCCAAACCAGGTGCACTACCA 7110 Query 36329 GACTGCGCTACACTCCGA 36346 | ||| |||| |||||| Sbjct 7109 GGCTGTGCTATGCTCCGA 7092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154104536478204