Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028860.1 Length=52392 Score E Sequences producing significant alignments: (Bits) Value seq15871 100 1e-16 seq482 96.9 1e-15 seq28703 89.7 2e-13 >seq15871 Length=886 Score = 100 bits (110), Expect = 1e-16 Identities = 64/70 (91%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 4059 CAGTAGCTCAATTGGTAGAGCAGCGGTTTCCAAAGCCGCTCGTTGGGGGTTCGAGTCCCT 4118 ||||||||||||||| ||||||||||| |||||| |||| ||||||||||||||||||| Sbjct 627 CAGTAGCTCAATTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGGGGGTTCGAGTCCCT 686 Query 4119 CCTGGCCTGC 4128 |||||| ||| Sbjct 687 CCTGGCGTGC 696 >seq482 Length=15596 Score = 96.9 bits (106), Expect = 1e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 4056 GGTCAGTAGCTCAATTGGTAGAGCAGCGGTTTCCAAAGCCGCTCGTTGGGGGTTCGAGTC 4115 ||||||||| |||||||||||||| |||| |||||| ||| |||||||||||||||| Sbjct 73 GGTCAGTAGTTCAATTGGTAGAGCGTCGGTCTCCAAAACCGAATGTTGGGGGTTCGAGTC 14 Query 4116 CCTCCTGGCCTGC 4128 ||||||||||||| Sbjct 13 CCTCCTGGCCTGC 1 >seq28703 Length=392 Score = 89.7 bits (98), Expect = 2e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 4053 CTGGGTCAGTAGCTCAATTGGTAGAGCAGCGGTTTCCAAAGCCGCTCGTTGGGGGTTCGA 4112 || |||||||||||||||||| ||||| |||| |||||| ||| ||||||||||||| Sbjct 275 CTAGGTCAGTAGCTCAATTGGCAGAGCGACGGTCTCCAAAACCGTAGGTTGGGGGTTCGA 216 Query 4113 GTCCCTCCTGGCCTGCAAT 4131 ||||||||| ||||| || Sbjct 215 TTCCCTCCTGACCTGCCAT 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 167462096865372