Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028879.1 Length=43225 Score E Sequences producing significant alignments: (Bits) Value seq11540 91.5 4e-14 seq28872 87.8 5e-13 >seq11540 Length=1245 Score = 91.5 bits (100), Expect = 4e-14 Identities = 64/72 (89%), Gaps = 1/72 (1%) Strand=Plus/Plus Query 31253 TTGGCTGCGCCGGTAGGATTCGAACCTACGAATGCCGGAATCAAAATCCGGTGCCTT-AC 31311 ||||| | | ||| |||||||||||||||||||||||| ||||||| |||||||||| || Sbjct 329 TTGGCAGGGGCGGAAGGATTCGAACCTACGAATGCCGGGATCAAAACCCGGTGCCTTAAC 388 Query 31312 CGCTTGGCGACG 31323 | |||||||||| Sbjct 389 CACTTGGCGACG 400 >seq28872 Length=387 Score = 87.8 bits (96), Expect = 5e-13 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 31252 TTTGGCTGCGCCGGTAGGATTCGAACCTACGAATGCCGGAATCAAAATCCGGTGCCTTAC 31311 ||||||||| |||| ||||||||||| |||||||| || ||| | || |||||||||| Sbjct 76 TTTGGCTGCCCCGGATGGATTCGAACCACCGAATGCCTGAGTCAGAGTCAGGTGCCTTAC 17 Query 31312 CGCTTGGCGACGGCGC 31327 ||||||||||||| || Sbjct 16 CGCTTGGCGACGGGGC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138140076733866