Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq6008 152 2e-32 seq19878 149 2e-31 seq21255 143 8e-30 seq6617 140 1e-28 seq7953 132 2e-26 seq25480 114 4e-21 seq26503 87.8 6e-13 seq18790 86.0 2e-12 seq32224 84.2 7e-12 >seq6008 Length=2324 Score = 152 bits (168), Expect = 2e-32 Identities = 198/272 (73%), Gaps = 4/272 (1%) Strand=Plus/Plus Query 39029 TGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGC--GACGGTCATCGAAGTC 39086 |||||||||| || | || || |||||| | | ||| ||| | || |||||| Sbjct 983 TGCCGTACTTGTCCTTCACATAATCGATCACACGGTCGCGGTTGGACTGGCA--GAAGTC 1040 Query 39087 GATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCC 39146 |||||| | |||||||||||| || ||||| || |||||||| || ||||| | || Sbjct 1041 GATGTCGAAGTCGGGCATGGACACCCGCTCGGGATTCAGGAAGCGTTCGAACAGCAGGTT 1100 Query 39147 GTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGC 39206 || | | |||||||||||||||||| ||| ||||| || |||||||||| || | Sbjct 1101 GTACTGCAGCGGGTCCAGGTCGGTGATCTTGAGCGCGTAGGCCACCAGCGAGCCGGCACC 1160 Query 39207 AGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGC 39266 || || || || || ||||| |||||||||||||||||| ||||||||| | Sbjct 1161 GGACCCCCGTCCCGGCCCGACAGGGCAGCCGTTCTCCTTCGCCCACTGAATGAAGTCGCC 1220 Query 39267 GACGACGAGGAAGTACGACGGGAACCCCATCT 39298 |||| |||||||| ||||| ||||||| Sbjct 1221 CACGATCAGGAAGTAGCCGGGGAAGCCCATCT 1252 Score = 114 bits (126), Expect = 4e-21 Identities = 126/168 (75%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 38079 GCCTCGCTCGCTCGCCCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGCACCTCGGGCTT 38138 |||| |||| ||| ||||| ||||| || || | | ||||| | |||||| ||| Sbjct 30 GCCTTTCTCGGCCGCTCCCTTGCGGAAGATCTCGCGGTGTTCGGCCATCTCCTCGGCCTT 89 Query 38139 CTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGAT 38198 ||||||||||||||| || || || | |||||| ||||||| |||| ||| |||| | Sbjct 90 CTTCTTGCCCATGGCCCGGCGCAGCATGTCGGCACCACCGAGGCTGTAGCCGCCCAGCAC 149 Query 38199 CTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGAAGGT 38246 ||| || | || | ||||||||||||||| | |||| |||| |||| Sbjct 150 CTGGGCGGTCTGCATCACCTGCTCCTGGTACACCATGATCCCGTAGGT 197 >seq19878 Length=680 Score = 149 bits (164), Expect = 2e-31 Identities = 213/298 (71%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 39027 ACTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCACGGCGACGGTCATC--GAAG 39084 || |||||| ||||| ||||| |||||| | |||||| || ||| |||| Sbjct 88 ACGGCCGTAGGCCTCGGCCACGTAGTCGATCACCCGGTCACGGC--CGTCCATGCAGAAG 145 Query 39085 TCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGC 39144 |||| ||| | |||||||||||| ||||| |||||||| ||||| |||||||| | || Sbjct 146 TCGACGTCGAAGTCGGGCATGGAAACACGTTCAGGGTTGAGGAAGCGCTCGAACAGCAGG 205 Query 39145 CCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCC 39204 ||| | | ||||| || ||||||||| || | || || ||||||| ||||| Sbjct 206 TCGTAGGCCAGCGGGTCGAGATCGGTGATCTTCAGTACATAGGCCACCAGCGAACCAGCA 265 Query 39205 GCAGAGCCGCGCCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCG 39264 | || ||||| || ||||| ||| || |||| | ||| ||||| ||||||||| Sbjct 266 CCCGAACCGCGGCCCGGGCCAACCGGTACATCGTTGTTCTTGGCCCACTTGATGAAGTCC 325 Query 39265 GCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGATCATGTCGATCTCGTACT 39322 || | |||||||| ||||| ||||||||| |||| ||||| | |||| ||| Sbjct 326 ATAACAATCAGGAAGTAACCGGGGAAGCCCATCTGGATGATGATGTCCAGCTCGAACT 383 >seq21255 Length=623 Score = 143 bits (158), Expect = 8e-30 Identities = 198/275 (72%), Gaps = 4/275 (1%) Strand=Plus/Minus Query 39046 ACGTACCGGATCACGTCGCCACGGCGACGGTCATC--GAAGTCGATGTCCACGTCGGGCA 39103 ||||| |||||| ||| | ||||| | ||| |||||||||||| | |||||||| Sbjct 344 ACGTAGTCGATCACCTCGTCGCGGCG--GTCCATGCAGAAGTCGATGTCGAAGTCGGGCA 287 Query 39104 TGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCA 39163 | || || || || ||||||||||| |||||||| | || || || | ||||||| Sbjct 286 TCGACACGCGTTCGGGGTTCAGGAAGCGCTCGAACAGCAGGTTGTACGGCAGCGGGTCCA 227 Query 39164 GGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGGC 39223 ||||||||||| || || | || |||||||||| || | || || || || |||| Sbjct 226 GGTCGGTGATCTTCAGCGCCCATGCCACCAGCGAGCCGGCACCCGAACCACGGCCGGGGC 167 Query 39224 CGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACG 39283 ||| | | ||| | | ||| |||| |||||||||||| |||| |||||||| Sbjct 166 CGATCGGAATGCCCTGGTTCTTGCCCCACTGGATGAAGTCGGCCACGATCAGGAAGTAGC 107 Query 39284 ACGGGAACCCCATCTGGTTGATCATGTCGATCTCG 39318 ||||| ||||||| | |||| ||| || |||| Sbjct 106 CGGGGAAGCCCATCTTGATGATGGTGTTGAGCTCG 72 >seq6617 Length=2135 Score = 140 bits (154), Expect = 1e-28 Identities = 261/379 (69%), Gaps = 6/379 (2%) Strand=Plus/Minus Query 38948 TGTCCAGCACGCGGGCCGCGTCCTTCATCGCGTTGCGCGCCTTGATCCGTCCGTACGTCG 39007 |||||||||||||| || |||| || || |||||| || ||| | || | Sbjct 864 TGTCCAGCACGCGGCCCACGTCGCGGATGGCCGCGCGCGCGGCCATGGTGCCGAAGGTGG 805 Query 39008 CGATCTGTGCGACCTTGTCACTGCCGTACTTCTCGGTGACGTACCGGATCACGTCGCCAC 39067 ||||||| ||| ||| | ||||||| || | || || ||| ||| | | | Sbjct 804 CGATCTGGCTGACGGCGTCGCGGCCGTACAGCTGCTTCACATAGTCGATGACGCGGTCGC 745 Query 39068 GGC--GACGGTCATCGAAGTCGATGTCCACGTCGGGCATGGAGACACGCTCAGGGTTCAG 39125 || | | | || |||||| | ||| | |||||||||||| |||||||| || || || Sbjct 744 GGTTGGCCTGGCA--GAAGTCCACGTCGAAGTCGGGCATGGACACACGCTCGGGATTGAG 687 Query 39126 GAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCCCGAGGGCGTA 39185 ||| |||||||| | || || | ||||||||||| |||||| ||| |||| Sbjct 686 GAAACGCTCGAACAGCAGGTTGTATTCCAGCGGGTCCAGGTCCGTGATCTTGAGCACGTA 627 Query 39186 CGCGGCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGGCCGAC-CCACACGCCGTTCTCCT 39244 || |||||||||| || | || ||||| || || || || ||| |||||| || Sbjct 626 GGCCACCAGCGAGCCGGCGCCCGATCCGCGGCCCGGACCCACGGGACA-GCCGTTGAGCT 568 Query 39245 TCGCCCAGCCGATGAAGTCGGCGACGACGAGGAAGTACGACGGGAACCCCATCTGGTTGA 39304 | ||||| ||||||||| | |||| ||||||||| ||| || ||||||| | || Sbjct 567 TGGCCCACTTGATGAAGTCACCCACGATGAGGAAGTAGCCCGGAAAGCCCATCTTGAGGA 508 Query 39305 TCATGTCGATCTCGTACTC 39323 | || |||||||| |||| Sbjct 507 TGGTGCCGATCTCGAACTC 489 Score = 125 bits (138), Expect = 2e-24 Identities = 231/337 (69%), Gaps = 9/337 (3%) Strand=Plus/Minus Query 37940 ACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGTCCGTACGCCG 37999 ||||||||| ||||||| |||||| | |||||| | ||||| | || ||| || | Sbjct 1875 ACTCGGCCGTGTAGTGCACCTTCAGCCAGGCCGTGTGATAGGCCAGCAGCGAGTAGGCGG 1816 Query 38000 CAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCC 38059 | | ||||| |||||||||| |||| || ||||| | | || ||| | ||| | Sbjct 1815 CGGCGTGCGACTTGTTGAAGCCGTAGCCCGCGAACTTCTCCATCAGGTCGAAGACCTC-- 1758 Query 38060 GGATGGCAG---CCTCCGAGTAGCCTCGCTCGCTCGCCCCCTTCTGGAAGTTCACGAACT 38116 | ||| |||| | ||| ||| | ||| |||| ||||| || || | Sbjct 1757 -GTCGGCCTTTTCCTCGCTGATGCCCTGCTTGGCCGCGCCCTCGCGGAAGATCCCGCGGT 1699 Query 38117 CCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTGAC 38176 | || ||| ||||| |||||||||||||||||| || || | ||||||||| | Sbjct 1698 GCATGACCATTTCCTCGACCTTCTTCTTGCCCATGGCACGGCGCAAGAGGTCGGCGCCGC 1639 Query 38177 CGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGA 38236 | || | ||| ||| |||| | ||| || | || | ||||||||||||||||| |||| Sbjct 1638 CCAGCGAGTAGCCGCCCAGCACCTGGGCGGTCTGCATCACCTGCTCCTGGTAGACCATGA 1579 Query 38237 GCCCGAAGGTCGGGTCCAGGA---TCTCGGCCAGCGG 38270 |||| |||| | |||| | | ||| ||||||| Sbjct 1578 TCCCGTAGGTTTCGGCCAGCACCTTTTCGACCAGCGG 1542 >seq7953 Length=1812 Score = 132 bits (146), Expect = 2e-26 Identities = 402/610 (66%), Gaps = 31/610 (5%) Strand=Plus/Plus Query 37930 GCCGCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGT 37989 || |||||| |||||| |||||||||| ||||||| | ||||| |||| |||| || Sbjct 1224 GCGGCCATGAACTCGGACGGGTAGTGCTTCTTCAGCCAGGCCGTCTGGTACGCGACCAGC 1283 Query 37990 CCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCC 38049 |||||| || | ||||| |||||||||| |||| || ||||| | | || ||| Sbjct 1284 GAGTACGCGGCGGCGTGCGACTTGTTGAAGCCGTAGCCCGCGAACTTCTCCATCAGGTCG 1343 Query 38050 CACAC--CGCCCGGATGGCAGCCTCCGAGTAGCCTCGCTCGCTCGCCCCCTTCTGGAAGT 38107 | | || | | | | ||| ||| ||| | || | || || | ||||| Sbjct 1344 AAGATTTCGTCGGCCTTGGGGCCATCGAC--GCCGCCCTTGGCTGCACCTTCGCGGAAGA 1401 Query 38108 TCACGAACTCCTTGGCCAGCACCTCGGGCTTCTTCTTGCCCATGGCGCGACGGAGGAGGT 38167 || || | |||||||| | | ||| |||||||||||| ||||| || || |||| Sbjct 1402 TCTCGCGGTGCTTGGCCATTTCGGCCGGCACCTTCTTGCCCATCGCGCGGCGCAGCAGGT 1461 Query 38168 CGGCCTGACCGAGGGTGTACCCGGCCAGGATCTGCGCCGCCTTCTGCACCTGCTCCTGGT 38227 |||| || || | ||| ||| | | |||||||||| || | ||||||||||||| Sbjct 1462 CGGCGCCGCCCAGCGAGTAGCCGCCGACGATCTGCGCCATCTGCATGACCTGCTCCTGGT 1521 Query 38228 AGATGATGAGCCCGAAGGTCGGGTCCAGGATCTCGGCCAGCGGCTCCTCCACCTCGGGGT 38287 ||| |||| ||| ||||| ||||| || || | ||| | | | |||| Sbjct 1522 AGACCATGATGCCGTAGGTCTCTTCCAGCAT---GGTCCGCG--TGCGC-------GGGT 1569 Query 38288 --GGATCGGCGTGATCTCCTGCTGACCGTTCTTGCGGAGGGCGTAGTTCGTGTGCGAGCC 38345 |||| | || |||| | |||| |||||| | || | || | | Sbjct 1570 CGGGAT--ACTCGAATTCCTCGCGGCCGTGCTTGCGCTCGACGAA---CGAG---GGAAT 1621 Query 38346 CATGCCCATCGGACCCGGACGGTACAGCGCGACGACGGCCGAGATGTCCTCGAACTGGTC 38405 |||| ||||||| ||||| |||||||||||| | || | ||||||||| |||| Sbjct 1622 CATGTCCATCGGGCCCGGGCGGTACAGCGCGTTCAGCGCGATCAGGTCCTCGAAGCGGTC 1681 Query 38406 CGGCTTCAGCAGGC-GAAGCAGGGAGCGCATCGCGCCGCCGTCGAGCTGGAAGACCGAGA 38464 |||||| || | ||| | |||||| || | |||| |||||| |||||| Sbjct 1682 GGGCTTC-GCTTCCTTCAGCGCGCGGCGCATGCCGGTGGATTCGAACTGGAACACCGAGC 1740 Query 38465 GGGTGTCGCCCCTGGCCAGCAGCTCGTAG--GTTGCCGG-GTCGTCCAGCGGGATGTTCT 38521 ||| | ||| |||| | || ||| | | || || |||||||||||||||| | Sbjct 1741 CGGTATTGCCGTTGGCGAACACGTCGCGGTAGACGCTGGCGTCGTCCAGCGGGATGGTGG 1800 Query 38522 CGATGTCGAC 38531 |||||| || Sbjct 1801 TGATGTCCAC 1810 >seq25480 Length=481 Score = 114 bits (126), Expect = 4e-21 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 38998 CCGTACGTCGCGATCTGTGCGACCTTGTCACTGCCGTACTTCTCGGTGACGTACCGGATC 39057 ||||| || |||||| ||| ||| | ||||||||| | |||||| ||| Sbjct 227 CCGTAGGTGATGATCTGGCTGACGCGGTCGCGGCCGTACTTGCGCGCGACGTAGTCGATG 168 Query 39058 ACGTCGCCACGGCGACGGTCATC--GAAGTCGATGTCCACGTCGGGCATGGAGACACGCT 39115 || || | ||||| | ||| |||||||||||| | ||||||||| || || || | Sbjct 167 ACTTCATCGCGGCG--GTCCATGCAGAAGTCGATGTCGAAGTCGGGCATCGACACGCGTT 110 Query 39116 CAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGATGGGGTCCAGGTCGGTGATCC 39175 | || || ||||| |||||||| | ||||||| || | |||||||||||||||| | Sbjct 109 CCGGATTGAGGAAGCGCTCGAACAGCAGCCCGTACGGCAGCGGGTCCAGGTCGGTGACCT 50 Query 39176 CGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCGCGCCCAGGGCC 39224 || || ||||| |||||||||| || | |||||||| || || || Sbjct 49 GCAGCGCCCACGCGACCAGCGAGCCCGCGCCCGAGCCGCGGCCGGGACC 1 >seq26503 Length=451 Score = 87.8 bits (96), Expect = 6e-13 Identities = 137/195 (70%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 39096 GTCGGGCATGGAGACACGCTCAGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGAGGGAT 39155 ||||||||| || || || || ||||| ||||| || ||||||| ||| | | | | Sbjct 448 GTCGGGCATCGACACGCGTTCCGGGTTGAGGAAGCGTTCGAAGAGCAGCGAGAAACGTAG 389 Query 39156 GGGGTCCAGGTCGGTGATCCCGAGGGCGTACGCGGCCAGCGAGCCAGCCGCAGAGCCGCG 39215 || || | ||||| ||| || || || ||| ||||||| || || | || || || Sbjct 388 CGGATCGACATCGGTAATCGTCAGCGCATAGGCGACCAGCGATCCCGCACCCGAACCACG 329 Query 39216 CCCAGGGCCGACCCACACGCCGTTCTCCTTCGCCCAGCCGATGAAGTCGGCGACGACGAG 39275 || ||||||||| | | | || ||| ||||| |||||||||||| |||| || Sbjct 328 ACCGGGGCCGACCGGAATATCATGCTGCTTTGCCCATTTGATGAAGTCGGCAACGATAAG 269 Query 39276 GAAGTACGACGGGAA 39290 ||||| | |||||| Sbjct 268 AAAGTA-GCCGGGAA 255 >seq18790 Length=730 Score = 86.0 bits (94), Expect = 2e-12 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 37929 GGCCGCCATGTACTCGGCCGGGTAGT-GCGTCTTCAGGTACGCCGTGCGGTAGGCGATGA 37987 |||||||||| ||||||||||||||| |||| ||||| | || || ||||| || | Sbjct 120 GGCCGCCATGAACTCGGCCGGGTAGTGGCGT-TTCAGCCATGCGGTCTGGTAGCTGACCA 62 Query 37988 GTCCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAA 38033 | |||| || || | ||||| |||||||||| |||| |||||||| Sbjct 61 GCGCGTAGGCGGCGGCGTGCGACTTGTTGAAGCCGTAGCCGGCGAA 16 >seq32224 Length=302 Score = 84.2 bits (92), Expect = 7e-12 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 38138 TCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCCTGACCGAGGGTGTACCCGGCCAGGA 38197 ||||||||||||| |||||||| || | || || ||||| | || |||||||||| Sbjct 162 TCTTCTTGCCCATCGCGCGACGCAGCAAATCCGCGCCGCCGAGCGAATAGCCGGCCAGGA 103 Query 38198 TCTGCGCCGCCTTCTGCACCTGCTCCTGGTAGATGATGAGCCCGAAGGT 38246 ||||||| |||| | |||||| ||||| |||| || || ||| |||| Sbjct 102 TCTGCGCGGCCTGCATCACCTGTTCCTGATAGACGAAGATGCCGTAGGT 54 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159647796092898