Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028931.1 Length=55108 Score E Sequences producing significant alignments: (Bits) Value seq2904 246 1e-60 seq13677 131 6e-26 seq2903 109 2e-19 seq3180 84.2 8e-12 >seq2904 Length=4329 Score = 246 bits (272), Expect = 1e-60 Identities = 428/614 (70%), Gaps = 24/614 (4%) Strand=Plus/Minus Query 52571 CGCGACGGGATCAACGTCGGCGTGCGCCTGCCGGACTCCATCATGGTTTTGGACGTGGAC 52630 ||||||||| | ||| | |||||||||||||| | | | | | || ||||||||||| Sbjct 603 CGCGACGGGCTGAACCTGGGCGTGCGCCTGCCCGCCGACGTGGTCGTGGTGGACGTGGAC 544 Query 52631 CCGCGCAACTTCCCCGAGGGGCGCGACTCCCTTGCCGAGCTGGTCAAGGACATGTCCCTC 52690 |||||||||||||| | |||||||||| || |||||||||| | | | ||| Sbjct 543 CCGCGCAACTTCCCGGCGGGGCGCGACAGTCTGGCCGAGCTGGCTGCCGCCTTCGGCCTG 484 Query 52691 GACCTCTCGCAGTGCCCCCACACAATCACGGGCT--CGGG-------CGGCCATCATTAC 52741 ||| || | || ||| | || || | || ||||||||| | | Sbjct 483 CCGCTCACGTCGGCACCGCACGTCCTGACCGGTAACCTGGAACACCCCGGCCATCACTTC 424 Query 52742 TGGTTCCGCAAGCCCGCCGACGTATCCCTGCTTGACTCGCTGGACGACTACCAGGGCGTG 52801 | |||||||||||||| | || ||||| ||| |||||| | | |||||| Sbjct 423 TACTTCCGCAAGCCCGCGGGCGCCGTGCTGCTGGACAGCGTGGACGGTTTCGCGGGCGTC 364 Query 52802 GAGTTCAAGAGCCTTGGCCGCCAAGTAGTCGCTGCCGGCTCAGTCCACCCGTCAGGCCGT 52861 ||||||||| || |||||||| || ||||| | ||||| || |||||| | ||| | Sbjct 363 GAGTTCAAGTCGCTCGGCCGCCAGGTCGTCGCCCCTGGCTCCGTGCACCCGACCGGCGGC 304 Query 52862 CACTATGAATGGGA-CGACCTT-GCCCCTGCCTTGCAGGATGGGCTGCCTGAACTGCCTG 52919 | || |||| | | || ||||| || |||| | |||| || ||||| | Sbjct 303 CTGTACCGCTGGGCGCCAGATTCGCCCCCGC--TGCACC---GCATGCCGGATCTGCCCG 249 Query 52920 AGCGCCTGCTCCGCCTCATCCGTCGTCCGACCCGG-GCGCACGGCGAGGCTGCGGGCCTC 52978 ||| ||| || | || || | |||| | | | | || ||| ||||| Sbjct 248 CGCGGCTGGTCG-----AGGCGGCGCGCAGGCCGGAGAGGAAG-CG-GGCCACGGGCGCA 196 Query 52979 GGCGAGCTCACGCCTGAGATGCTCGCCGACACCCTGGAGCAGCTCGACCCGACAGAGTTC 53038 |||||| |||| | ||| |||||||| | |||||||| || |||||||| || ||| Sbjct 195 GGCGAGATCACCGCCGAGCAGCTCGCCGCATCGCTGGAGCACCTGGACCCGACGGACTTC 136 Query 53039 CGCGACCATGACACGTGGCGCGACCTGATGATGGCCTGCCACCACGCCACGAACGGCGAG 53098 ||||| || ||| | |||||||| ||||||||||| |||||||||||||| |||||| | Sbjct 135 CGCGAGCACGACGCATGGCGCGAGCTGATGATGGCGTGCCACCACGCCACCGACGGCGCG 76 Query 53099 GGGCGGCAGGAGTTCATTGACTGGTCCACGCAAGACCTGCAGTACGTGGACGACGCCTGG 53158 ||||||||||||||||| |||||| |||| |||| | ||| || |||| ||| ||| Sbjct 75 GGGCGGCAGGAGTTCATCGACTGGAGCACGTCCGACCCGAAGTTCGCGGACCACGAGTGG 16 Query 53159 ATCATCGGCCGCCG 53172 ||| |||||||||| Sbjct 15 ATCGTCGGCCGCCG 2 >seq13677 Length=1044 Score = 131 bits (144), Expect = 6e-26 Identities = 135/177 (76%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 4342 CTGTGGGACGCTGTCATGCGCTCCACCTGGGACTGGGCCGAGCCGGGCGTCCTGTTCATC 4401 ||||||||| ||||| ||| || | |||| |||||||||||| || | | ||| Sbjct 641 CTGTGGGACATGATCATGGTCTCGACGTACGACTACGCCGAGCCGGGCTTCATCCTGATC 582 Query 4402 GACACCATCAACCGCATGAACAATCTCTGGTACTGCGAGGAGATTGCGGCCACCAACCCG 4461 ||| | ||||| |||||||| ||||| |||||| || || ||||||||| Sbjct 581 GACCGCGTCAACGAGATGAACAACAACTGGTGGTGCGAGACCATCCGCGCGACCAACCCG 522 Query 4462 TGCGGCGAGCAGCCGCTGCCTCCGTTCGGCGCCTGCCTGCTTGGCTCCTTCAACCTG 4518 ||||||||||||||||| || |||| ||||||||||||||| ||||| |||||||| Sbjct 521 TGCGGCGAGCAGCCGCTACCGCCGTACGGCGCCTGCCTGCTGGGCTCGGTCAACCTG 465 Score = 86.0 bits (94), Expect = 2e-12 Identities = 144/203 (71%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 4068 CAGCTCCGGCCCCATCTCCTTCATGGAGATTTTCGACGCGGTCTGCCGCTGCACGTCCTC 4127 || ||||||||| || ||||||||||| || | |||| | | ||| | | |||||| Sbjct 1026 CACCTCCGGCCCGATGTCCTTCATGGATATCTACGACAAGATGTGCTTCACCGTGTCCTC 967 Query 4128 GTCCGGCCACCGCCGTGGCGCCCAGATGGGCGTCATGCG-CATCGACCACCCCGACATCT 4186 ||||| |||||| ||||| ||||||||| | | || ||| |||||| ||| || Sbjct 966 CGCCGGCGGCCGCCGCGGCGCGCAGATGGGC-ACGTTCGAAATCTCCCACCCGGACGTCA 908 Query 4187 TCGAGTTCATCCACGCCAAGCAGAACGAGCACTTCCTGCGCGGCTTCAATATCTCCATCG 4246 || ||||||| |||||||| | || | ||||||| ||||| | || | | Sbjct 907 AGGACTTCATCCGCGCCAAGCGCGAAGACGGCCGCCTGCGCCAGTTCAACCTGTCGCT-G 849 Query 4247 CCG-TCACCGACGAGTTCATGGA 4268 | | ||||||||| |||||||| Sbjct 848 CTGATCACCGACGGCTTCATGGA 826 >seq2903 Length=4332 Score = 109 bits (120), Expect = 2e-19 Identities = 120/160 (75%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 4338 CGAGCTGTGGGACGCTGTCATGCGCTCCACCTGGGACTGGGCCGAGCCGGGCGTCCTGTT 4397 ||||||||||||| | || ||| || ||| |||| |||||||||||| |||| || Sbjct 376 CGAGCTGTGGGACACCGTGATGACGTCGGCCTACGACTTCGCCGAGCCGGGCATCCTCTT 317 Query 4398 CATCGACACCATCAACCGCATGAACAATCTCTGGTACTGCGAGGAGATTGCGGCCACCAA 4457 | | ||| ||||||| ||||| || | ||||||||||| || || |||||||| Sbjct 316 CCTGGACCGCATCAACGAGGACAACAACCTGCGCTACTGCGAGGACATCGCCGCCACCAA 257 Query 4458 CCCGTGCGGCGAGCAGCCGCTGCCTCCGTTCGGCGCCTGC 4497 || |||||||||||||| ||||| | | |||| |||| Sbjct 256 TCCCTGCGGCGAGCAGCCCCTGCCGTCCTACGGCTGCTGC 217 >seq3180 Length=4021 Score = 84.2 bits (92), Expect = 8e-12 Identities = 88/113 (78%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 656 CGTGCCGTGGACGGCTATGACGAGCCGGTCATCTACCAGGGCATGCC-GACCACGGTCGT 714 || |||| | |||||| ||||||||||||||| ||||||| | ||| |||| || Sbjct 2371 CGCGCCGCGATCGGCTACGACGAGCCGGTCATCCACCAGGG-ACGCCTCGCCACCACCGC 2313 Query 715 CGACCCGGTCACCGGCGAGCAGCGGCAGCTGACGGTCCGGAAGTACAGCGACA 767 |||||| ||||||||| |||||| ||| || ||| ||||| ||||||||| Sbjct 2312 GGACCCGACGACCGGCGAGGAGCGGCCGCTCACCGTCAGGAAGCACAGCGACA 2260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 176149628956260