Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028936.1 Length=59052 Score E Sequences producing significant alignments: (Bits) Value seq1923 86.0 2e-12 >seq1923 Length=5946 Score = 86.0 bits (94), Expect = 2e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 53446 CATCACAACTACACGCAGAAGGAAACTCACGGCGGCCGTGAGGTGTGGTTGACCCGCAAG 53505 || ||||||||| |||||||||||| ||| ||||| || || | ||||||| ||| Sbjct 4118 CACCACAACTACGTGCAGAAGGAAACGCACCACGGCCAGGAACTGCTGGTGACCCGGAAG 4177 Query 53506 GGTGCGATCGACGCGAACAAGGGGGTGCGGGGGCTGATTCCCGGCAGCATGGGCACCCGC 53565 || || || || | | || | || ||| | |||||||||||||||||||| ||| Sbjct 4178 GGGGCCGTCAGTGCCCGCGAAGGCGAGCTGGGCATCATTCCCGGCAGCATGGGCACGCGC 4237 Query 53566 TCGTATGTCGTCACCGGCAAGGGCAATCCCGA 53597 || |||| |||||||||||| |||| Sbjct 4238 AGCTACATCGTGCGCGGCAAGGGCAACGCCGA 4269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 188765102655252