Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028943.1 Length=29237 Score E Sequences producing significant alignments: (Bits) Value seq8149 233 4e-57 seq1131 210 4e-50 seq8333 192 1e-44 seq1720 86.0 1e-12 >seq8149 Length=1767 Score = 233 bits (258), Expect = 4e-57 Identities = 448/651 (69%), Gaps = 26/651 (4%) Strand=Plus/Minus Query 23020 CCGAGGTGAAAGCCTACCGTCAGAATTTCAGCCAGCGTGAGCTGATGGTCATCTGGCCGG 23079 |||||| | |||||||| || | ||| ||||||| ||||||||| | | ||||| | Sbjct 1744 CCGAGGCCCAGGCCTACCGCGAGCACTTCGGCCAGCGCGAGCTGATGCTGCTGTGGCCCG 1685 Query 23080 ATTTCCTCGCATGGGATACGGTCACGAGTACCACCGCCACCGCGTATGCCACTGCCCGTG 23139 ||| || ||| | ||| |||| ||||| | | ||| | |||||| Sbjct 1684 GCTTCAAGGCGCTGGAC-CTGTC-----TACCGCCGCCGTGCAGGACGCCTCA-CCCGTG 1632 Query 23140 -------CGCTGGGACTGCGTGCCAAAATCGACCAGGAGCAGGGCTGGCATAAAACGCTG 23192 | ||||| ||||| || ||||||||||||||||||||||| || |||||| Sbjct 1631 GCCTACGCCCTGGGCCTGCGCGCGCGCATCGACCAGGAGCAGGGCTGGCACAAGACGCTG 1572 Query 23193 TCCAACGTCGGGGTAAACGGTGTTACCGGCATCA-GCGC-ATCTGTATTCTGGGATTTGC 23250 |||||||| | | || ||| |||||| |||| || || ||| |||| ||| Sbjct 1571 TCCAACGTGCCGTTGTCGGGCGTTCTGGGCATCTCGCGCGATGTGCATT--GGGACCTGC 1514 Query 23251 AGGAGTCCGGCACCGATGCTGACCTGCTGAACGAGTCAGGCGTCACAACGCTGATTCGTC 23310 | ||| ||||| || | | | || ||| || | ||| |||| |||||||| | Sbjct 1513 AAAGCCCCGATACCGAGGCCGGCATCCTCAACCAGGCCGGCATCACCACGCTGATCCAGA 1454 Query 23311 GTGACGGTTTCCGCTTCTGGGGTAACCGTACCTGCTCTGATGACCCGCTGTTCCTCTTTG 23370 | | || |||||||||||| || |||||| | || | |||||||| ||| | Sbjct 1453 GCCAGGGCCACCGCTTCTGGGGCTCGCGCACCTGCACGGACAGCGAGCTGTTCCGCTTCG 1394 Query 23371 AAAACTACACCCGCACCGCGCAGGTGCTGGCCGACACGATGGCTGAGGCGCACATGTGGG 23430 | | | |||||||||||||||||||||||||| ||||| |||||||| | |||| Sbjct 1393 AGTCCAGCGTGCGCACCGCGCAGGTGCTGGCCGACACCATGGCCGAGGCGCATTTCTGGG 1334 Query 23431 CGGTGGACAAGCCCAT-CACCGCAACGCTGATTCGCGACATCGTTGACGGCATCAATGCC 23489 | |||||||||||||| |||| || | ||| | |||||| | || |||||||| || Sbjct 1333 CCGTGGACAAGCCCATGCACCCCAGC-CTGGTCAAGGACATCCTGGAAGGCATCAACACC 1275 Query 23490 AAATTCCGTGAGCTGAAAACAAACGGCTATATCGTGGATGCGACCTGCTGGTTTAGCGAA 23549 || ||||| || ||||| | ||||| ||| |||| | | ||||| ||| Sbjct 1274 AAGTTCCGCGAACTGAAGGCCCTGGGCTACATCCTGGACGGCAAGGCCTGGT---ACGAC 1218 Query 23550 GAATC---CAACGATGCGGAAACCCTCAAGGCCGGAAAACTGTATATCGACTATGACTAT 23606 ||| | |||||| | | || ||||||||||| || ||| | ||||| ||||| Sbjct 1217 GAAACGGTCAACGAGACCGCCACGCTCAAGGCCGGCAAGCTGGTGCTGGACTACGACTAC 1158 Query 23607 ACACCGGTGCCTCCTCTCGAAAACCTGACCCTGCGCCAGCGTATCACCGAT 23657 || || |||||||| || || ||||| | |||||||| ||||||||| Sbjct 1157 ACGCCCGTGCCTCCGCTGGAGGACCTGGGTTTTCGCCAGCGCATCACCGAT 1107 >seq1131 Length=8710 Score = 210 bits (232), Expect = 4e-50 Identities = 963/1502 (64%), Gaps = 49/1502 (3%) Strand=Plus/Plus Query 8421 GGCGTGCATGGTCGCCCAGGCGAGGTCGGCGTGGCTGGCTTCCTCGCTGCGGCTGGCCTC 8480 ||| |||||| ||||||||| || || ||||||| ||| || |||||||||| || Sbjct 3894 GGCATGCATGCACGCCCAGGCCAGATCCGCGTGGCCGGCCTCATCGCTGCGGCCCGCGGT 3953 Query 8481 ATAGGTGGCGCTGCGTCCGCTGC--TG--GTCATGGTCTTGCGGATAGCCATAAACGA-G 8535 |||||| |||| ||||| || |||| ||||||||| |||||||||| | Sbjct 3954 GTAGGTGAT-CTGC---CGCTGGGATGCCGTCAGCACCTTGCGGATGGCCATAAACGCCG 4009 Query 8536 CTGGTGATGTCGGTGG---CGCTGACGTCATATTCCAGACAGCCACGGCGAATAACGTCT 8592 ||| | || ||| ||||| | ||| | || | ||| || || || | Sbjct 4010 CTGCC-ACATCCGTGCACCCGCTGTC--CATCTCAAAG-CGGCCCTTGCCGATCACCTGC 4065 Query 8593 TTTGCCTTGAGCACCATTGCGGTT-TTCATTTCCGGCGTGTAGCGGATATCGCGTGCGGC 8651 || ||||| ||||||| |||| | |||| ||| |||| || | || || Sbjct 4066 TTGGCCTTCAGCACCAG-GCGGCTCTTCACCTCCACGCTGTACTGGTAGGCCCGCGCCTG 4124 Query 8652 GGGATAGAACGAGCGAACGAGCTGGAACACGCCGACACCGAGGCCGGTGGCATCAATTCC 8711 ||| ||||| | ||| ||| | ||||| || || ||| ||| || || || Sbjct 4125 CGGAAAGAACTTGATGACGTTCTGATAGACGCCCTGCCCCAGCCCGCTGGTGTCGATGCC 4184 Query 8712 GATGTATTCGACGTTGTATTTTTCGGTGAGTTTGCGGATGGATTCAGCCTGGGTGGCAAA 8771 |||||| |||||| | || | |||| |||||||| || ||||| | || Sbjct 4185 GATGTAGGTCACGTTGAACTTCTGCGTGATCGCGCGGATGGCCTCTGCCTGCTGCTCGAA 4244 Query 8772 GTCCATGCCTTTCCACTGGTGACGCTCAAGTATTCTGAATTTGCCACCGGCCACCACCGG 8831 |||| || || |||| || || | || | | ||| ||||| || | | || ||| Sbjct 4245 GTCCGCCCCCTTGAACTGCTGCCGGTGCAGCAGCCGGAACTTGCCGCCCGGCGCCCGCGG 4304 Query 8832 CGGTGCCAGCACCACGCATC-CGGCACTGTCGCCACGGTGTGACGGGTCGTAACCAATCC 8890 |||||| | |||||| || | | ||| ||||| ||| || |||||||| || | || Sbjct 4305 CGGTGCAATCACCAC-CAGCGCCGCAGCATCGCCGGTGTGCGATGGGTCGTACCCCACCC 4363 Query 8891 AGACCGGGCGGGAGCCGAACGGATTCGCGGCAAACGGCGCATAGTCTTCCCATTCTTCC- 8949 | ||||| | || |||| || |||||||||| | || |||| | ||| Sbjct 4364 ACACCGGAAAGTGCGCGTACGGCCGCGTGGCAAACGGCTTGCAATCCGCCCACGCCTCCC 4423 Query 8950 AGCGTGTCGACCATGCAGCGTTGCAGCTCCTCGAACGGGAACACCGACGCCTTGTCGTCA 9009 ||| |||| |||||||||| |||| |||| || || ||||| || ||||||| Sbjct 4424 AGC-TGTCCACCATGCAGCCCTGCATTTCCTTGAGCGTGAACAGGCTAGCGCTGTCGTCG 4482 Query 9010 ACAAATTCACACATGAACAGGTTTTTAAAATCGTCGGCGCTGTTTTCGCGTTTAAGCTGC 9069 | || || |||||| ||||||| || || || | |||| |||| |||| Sbjct 4483 ATGAACTCGCACATGTACAGGTTGGCGAACTCTTCCGGGCTGCTTTCTTCCCGCAGCTCG 4542 Query 9070 TCAATGTCGAACAGCGTGCAGCCACCTTTCAGG------GCGTCCTCAATGGTGACAATC 9123 || ||||||||||| ||||||| |||| |||||||| || || || | Sbjct 4543 TCGATGTCGAACAGGTTGCAGCC------CAGGCGTGCCGCGTCCTCGATCGTCACCACG 4596 Query 9124 TGCCGCCACTGACCGTCCGCACAGAGAAGCCCACCGGCAAGAGCGTTATGACTGACGTCG 9183 | ||||||| | || || | | | | || ||| || || || || |||||| Sbjct 4597 TCGCGCCACTTGCGATCGGCCCCGCGGATGCCGCCGCGCAGCGCTGCGTGGCTCACGTCG 4656 Query 9184 ATTTCCACGCGTTCGGCGGCGCTGGCGCGTCCCCGGTTGAACAGTTCACCCGACCAGAAC 9243 || | | ||| | |||| || || |||| | || ||||||| Sbjct 4657 ATGGTGATGGCCTCGCCCTTGCTG---CGGCCTTTGTTGCGCTCCGTGCCGTTCCAGAAC 4713 Query 9244 GGGTAGGCGTCGTGCGCCAGCGTGGACGGGGTGGAGAAATAGGTCGAGCGCAGGTGACTC 9303 || || || || |||| || | |||||||||||||| || ||| |||| || | Sbjct 4714 GGATACGCCTCATGCGACATGGCCGACGGGGTGGAGAAGTACGTCTTGCGCCAATGCTTG 4773 Query 9304 TGTGAGGCCATACCTGATGCCACCTTACGCAGTACCTGAAAATTCGGTATCCAGAAAATC 9363 || | ||||| | | |||||||| || |||| || | ||| || | | Sbjct 4774 TGCGTCGCCATGGCCGCGGCCACCTTGTTGAGCTGGCGAAAGCCCGACACCCAAAAGAAC 4833 Query 9364 TCGTCGACGTACAGGTCGCCGTTATGGCTCTGCGCGGTGTTGGAGTTGGTGCCGAGAAAA 9423 || |||| ||| | ||||||| | | | |||||| || || | |||||||| | ||| Sbjct 4834 TCATCGAAGTAGAAGTCGCCGCTGCGCCCCTGCGCCGTCTTCGCATTGGTGCCCAAAAAG 4893 Query 9424 ATCAGTTTTGCGCCGTTATTGCCCAGGACAATCGGGTCACCGGTCAGGTCAACGTCAACC 9483 ||| | || ||||| ||| || || ||||| ||| |||| || ||| | ||| Sbjct 4894 TGCAGCTCCGCACCGTTCGA---CAGCACGATAGGGTCGCCGCTCAGCTCCACGCCCACC 4950 Query 9484 AGCCGGGCAAAGGCGATGATGTATTCGCGGAACACATACGCCTGCGTTTTACTGGCCGAC 9543 |||| ||||||||| | ||||| |||| | |||||||| || || || Sbjct 4951 AGCCCGGCAAAGGCCAGCATGTACGTCTTGAACTGGTGCGCCTGCGCCTTTGATGCAGAA 5010 Query 9544 AGAAAAATCTGGTTATGACCGGTTTTCAGGGCGCGCAGCAGCGCCTCGCGGGAAAAATAA 9603 || |||||||| || | || | | |||||| | |||||||||||||| ||| || Sbjct 5011 AGGAAAATCTGATTGCGCCCCTCCGTGATGGCGCGTATCAGCGCCTCGCGGGCAAAGTAC 5070 Query 9604 AACGTCGCGCCAATCTGGCGGGATTTCAGGATATCGCGGATGCGGTGCTCAAGCCCGGCG 9663 | || || || ||||| || || ||||| | || |||| | | || | | Sbjct 5071 CAAGTGGCCCCGATCTGCCGCGACTTCAGCAGCAGCCGCGTGCGCTCCGTCTGCGCCTCC 5130 Query 9664 CGATACCAGTGCAACTGATATTCGAAAGACTGCTCAAAGAAAATCTGCTCCAGCTTTTCG 9723 | |||| | | ||| | || |||||| ||| |||| | |||||| ||| Sbjct 5131 C---ACCACTTCGCGGCATACCCAAAGTTCTGCTCGTGGAAGATCTCCAGCAGCTTCTCG 5187 Query 9724 ATAGCCTCGTCACTGAAAAAATTCTTTTTCGGTTTGCGC-CGCCCGCCTTTGTTGCGGTT 9782 || ||| || |||| || ||||| ||||| | |||| |||||| Sbjct 5188 ATCTGCTCTTCGGTGAAGTGGTTGCGCTTCGGCGTGCGCTTGGGCGCC-GCGTTGCGCGC 5246 Query 9783 AGCGATGTTCGGATTAAGGTCTGCCTCGTTGCCGGT-CTGGCT-GTAGCGGTTTACCCGT 9840 || ||||| || || | ||| | || ||||| || || || |||||| | || || Sbjct 5247 GGCAATGTTGGGGTTCAAGTCGCCTTCCTTGCCCGTGCT--CTGGTAGCGCTCCACGCGC 5304 Query 9841 GCCAGTCGTTCAATCTGGCGTCCGAGCAGGTCAATTTCCTTGAAGTCACCGCCGGTTTTC 9900 ||| || || | ||| || || |||||||| || ||||||||||| ||||| || ||| Sbjct 5305 GCCGTGCGCTCCAGCTGCCGGCCCAGCAGGTCGATCTCCTTGAAGTCGCCGCCCGTCTTC 5364 Query 9901 TG 9902 || Sbjct 5365 TG 5366 Score = 91.5 bits (100), Expect = 3e-14 Identities = 109/147 (74%), Gaps = 1/147 (1%) Strand=Plus/Plus Query 10580 ATCGCGATGAACAAGGCCGCGCAGAAGGTCTATACCTCAATGGAAATTCAGCCGAACTTT 10639 |||| | |||||||||||| |||||| |||| ||||| || || || | || | || Sbjct 6146 ATCGAGCTGAACAAGGCCGGCCAGAAGCTCTACACCTCCATCGAGATCAACCCCGAATTC 6205 Query 10640 GCCAATACCGGCAAATGTTATCTGGTGGGTCTGGCCGTCACCGATGACCCGGCAAGCCTC 10699 ||| | |||||| | || || ||||| |||||||||||||| |||| || ||||| Sbjct 6206 GCCGACACCGGCGAGGCGTACCTCGTGGGCCTGGCCGTCACCGACAACCCCGCCAGCCTG 6265 Query 10700 GGCACGGAATACCTGGAATTCTGCCGC 10726 ||||| || ||||| ||| ||||| Sbjct 6266 GGCACCGAGGCGCTGGAGTTC-GCCGC 6291 >seq8333 Length=1724 Score = 192 bits (212), Expect = 1e-44 Identities = 474/702 (68%), Gaps = 48/702 (7%) Strand=Plus/Minus Query 22802 CGCGCAGACCGTTTCCAATATCATCGGCACCACCGACGAAAACGGTCAGTACACCGGACT 22861 |||| | |||| |||| |||||||||||||| ||| ||| ||| |||||| || Sbjct 1517 CGCGGAAACCGCAACCAACGTCATCGGCACCACCACCGAGGCCGGCCAGCGCACCGGCCT 1458 Query 22862 GAAAGCCCTGCTGGCGGCAGAGTCGGTAACCGGTGTTAAACCGCGTATTCTCGGAGTGCC 22921 | | |||||||||||||| ||| | | || || || ||||| || |||| | ||| Sbjct 1457 GCAGGCCCTGCTGGCGGCCGAGGGGCAATTGGGCGTGAAGCCGCGCATCATCGGCGCGCC 1398 Query 22922 GGGACTGGACACCAAAGAGGTGGCTGTTGCACTGGCATCAGTCTGTCAGAAGCTGCGCGC 22981 || ||||||||||| | ||||| || || |||| || || ||| |||| ||||| Sbjct 1397 CGGCCTGGACACCAAGGCCGTGGCCGTGGCCATGGCGTCCGTGGCGCAGCAGCTCCGCGC 1338 Query 22982 TTTCGGGTA--TATCAGCGCATGGGGCTGTAAAACCAT-----TTCCG------AGGTGA 23028 ||| || | || || | || || ||| || | ||| ||| Sbjct 1337 CTTCACCTACGTTTCGGCCCGCGGCGCC----AACGATGCCTATGCCGCCACCAAGG--- 1285 Query 23029 AAGCC---------TACCGTCAGAATTTCAGCCAGCGTGAGCTGATGGTCATCTGGCCGG 23079 ||||| ||||| | ||| | ||||| ||| ||||||| || ||||| Sbjct 1284 AAGCCGCCGTGCTCTACCGCGGCGAGTTCGGGCAGCGCGAGGTGATGGTGATGTGGCCCA 1225 Query 23080 ATTTCCTCGCATGGGATACGGTCACGAGTACCA--CCGCCACCGCGTATGCCACTGCCCG 23137 | ||||| || ||||| ||| | | | | | ||| | | ||| ||| Sbjct 1224 ACTTCCTGGCCTGGGA--CGGCGAGGCGGGCGAGGCCGTGGAGGTGCCCGCCGTCGCCTA 1167 Query 23138 TGCGCTGGGACTGCGTGCCAAAATCGACCAGGAGCAGGGCTGGCATAAAACGCTGTCCAA 23197 ||| ||||| ||||| ||||| | || |||||| |||||||| || | | ||||| Sbjct 1166 TGCCCTGGGCCTGCGCGCCAAGCTGGATCAGGAGATTGGCTGGCACAAGTCCATTTCCAA 1107 Query 23198 CGTCGGGGTAAACGGTGTTACCGGCATCA-GCGCATCTGTATTCTGGGATTTGCAGGAGT 23256 | | | ||| ||||| || ||||||| |||| ||| |||| || ||||| || Sbjct 1106 CATGGTGGTCAACGGCGTGGAAGGCATCACGCGCGA-TGTGTTCTTCGACCTGCAG-AGC 1049 Query 23257 CCGGC-ACCGATGCTGACCTGCTGAACGAGTCAGGC-GTCACAACGCTGATTCGTCGTGA 23314 ||||| | |||||| | | |||||| || ||| ||||| ||||||||||| || || Sbjct 1048 CCGGCCAGCGATGCGGGCTACCTGAAC-AGCAAGGAAGTCACCACGCTGATTCGGCGCGA 990 Query 23315 CGGTTTCCGCTTCTGGGGTAACCGTACCTGCTCTGATGACCCGCTG----TTCCTCTTTG 23370 ||| | ||||||||||||| || |||||| | | || || | ||| ||||| Sbjct 989 CGGATACCGCTTCTGGGGTTCGCGCACCTGCGAGGCCG-CCGGCGGAAAGTTCGCCTTTG 931 Query 23371 AAAACTACACCCGCACCGCGCAGGTGCTGGCCGACACGATGGCTGAGGCGCACAT-GTGG 23429 | ||||||||||||||| ||||||||||||||||| || || || |||||| | || Sbjct 930 AGCCCTACACCCGCACCGCCCAGGTGCTGGCCGACACCATCGCAGAAGCGCACTTCGTCT 871 Query 23430 GCGGTGGACAAGCCCAT-CACCGCAACGCTGATTCGCGACAT 23470 | | ||||||||||| |||| | ||||| | |||||||| Sbjct 870 TC-ATCGACAAGCCCATGCACC-CCTCGCTGGTGCGCGACAT 831 >seq1720 Length=6403 Score = 86.0 bits (94), Expect = 1e-12 Identities = 197/294 (67%), Gaps = 7/294 (2%) Strand=Plus/Plus Query 22571 CACCGTATCCACTGCCATTGTCGGCATGGTCTGCACGGCCAGCGATGCGGATGCGGAAAC 22630 || ||| ||||| ||| | ||||| | || |||||||||||| || ||||||| || Sbjct 6108 CATCGTGTCCACGGCCGTGATCGGCCTCGTGGCCACGGCCAGCGACGCCGATGCGGCCAC 6167 Query 22631 CTTCCCCCTCAATAAACCTGTGCTGATTACCAATGTGCAGAGCGCAATTGCAAAGGCCGG 22690 ||||| || || || |||||| | ||||| || | || || | |||||||| Sbjct 6168 TTTCCCGCTGAACCGTCCGGTGCTGGTCACCAAGGTCGATGCGGCCATCGGCAAGGCCGG 6227 Query 22691 TAAAAAAGGCACTCTGGCGGCATCGTTGCAGGCCATCGCCGACCAGTCAAAACCGGTCAC 22750 | || ||||| ||||| || || | |||||| || |||| ||||| Sbjct 6228 CACCAAGGGCACGCTGGCCCAGGCGCTGAACGCCATCAAGGAGCAGTGCCGCCCGGTGCT 6287 Query 22751 AGTTGTCGTGCGTGTGGAAGACGGCACCGGCGACGACGAGGAAACGAAACTCGCGCAGAC 22810 || |||||||| |||| || ||| |||| | ||||| ||| ||| | ||| Sbjct 6288 GGTCGTCGTGCGCGTGGCCGATGGCGAAGGCGCCACCGAGG--CCGAGCGCCGCACCGAC 6345 Query 22811 C--GTTTCCAATATCATCGGCACCACCGACGAAAACGGTCAGTACACCGGACTG 22862 | | |||| ||||||||||||||| || ||| |||||||| || ||| Sbjct 6346 CAGGACGCCAAGGTCATCGGCACCACCGCCGGCAAC---CAGTACACGGGCCTG 6396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 93397367276082