Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028955.1 Length=197361 Score E Sequences producing significant alignments: (Bits) Value seq4132 219 5e-52 >seq4132 Length=3213 Score = 219 bits (242), Expect = 5e-52 Identities = 407/597 (68%), Gaps = 23/597 (4%) Strand=Plus/Minus Query 155892 TTGATGAAATCTATCAGTTTGCTGCTGACATGGGTGGTGCAGGTTTTGTTTTCACTGGAG 155951 |||||||| | ||||| | ||||| || ||||| || ||||||| | || || ||| Sbjct 1816 TTGATGAAGTATATCAACTGGCTGCAGATATGGGAGGAGCAGGTTACATCTTTACCGGAA 1757 Query 155952 AAAATGATGCTGCCATTATGCAGAACTCAGCAACAATTAACTTGAATATATTAGAACAAC 156011 | || |||||| | ||||| || |||||| | || || | ||| || | Sbjct 1756 ATAACGATGCTAATGTAATGCATAATTCAGCAGCGATAAATCTTAATGTAGCA------- 1704 Query 156012 AAAGAATAT-TAAATGAAAGTTTATCTGTAAACAAAACTAAAATATTCTACTCTGGTTCA 156070 || || | | ||||| ||| | ||||| || |||| || ||| || Sbjct 1703 AAGGAGTCTGTAAATAAAAAAGT---------CAAAA---AAGTATTTTATTCTTCCTCT 1656 Query 156071 GCTTGTATGTATCCAGAACACAACCAACTTGATCCTAATAATCCTGACTGTCGTGAATCA 156130 || || |||||||| ||| |||||||| | |||||| ||||| | ||| ||| Sbjct 1655 GCCTGCATGTATCCGGAATACAACCAATTGGATCCTCTGAATCCAAATTGTGAAGAAAGT 1596 Query 156131 TCAGCATATCCAGCAAACCCAGACTCAGAGTATGGATGGGAAAAACTCTTCTCCGAGCGT 156190 || |||||||| ||||| || || ||||| || || ||||||||| | || || || || Sbjct 1595 TCTGCATATCCGGCAAATCCTGATTCAGAATACGGTTGGGAAAAATTGTTTTCTGAACGA 1536 Query 156191 TTGTATTTTTCTTATCACCGTAATTATGGTATACCTGTACGCGTCACTAGATACCATAAC 156250 || | ||| ||| | || | || || | | ||| || | | |||| ||||| Sbjct 1535 TTATTTTTAGCTTTTAACAGAAACTACAATCTTGATGTTCGTATTGCAAGATTTCATAAT 1476 Query 156251 ATCTATGGTCCTGAAGGCACTTGGGACGGAGGCAGAGAAAAAGCACCAGCAGCAATCTGT 156310 || | |||||| ||||||| ||| | || || | |||||||| || || ||||| || Sbjct 1475 ATTTTTGGTCCGCAAGGCACCTGGAAAGGCGGTAAGGAAAAAGCCCCGGCTGCAATGTGC 1416 Query 156311 AGAAAAGTAGCAAGACTTCCTGGTGTAGGTGGTGGTATAGAAGTATGGGGAGATGGACAA 156370 ||||| | || | ||| | |||| || || |||||||||||||| |||| | Sbjct 1415 AGAAAGGCTGCTGAAGCTCCGGA---AGGTTCTGAAATTGAAGTATGGGGAGACGGACTA 1359 Query 156371 CAAACAAGATCTTTCCTATACATTGATGAGTGTATAGAAGCATCAAGAAGATTGATGGAT 156430 ||||| | || || |||| | ||||||||| | ||||| || |||| ||| | Sbjct 1358 CAAACGCGTTCCTTTTTATATGTAGATGAGTGTGTCGAAGCCGTAATCCGATTAATGAAA 1299 Query 156431 TCTGATTTCATAGGACCTGTGAATATTGGTTCAGAAGAAATGGTGACTATCAATGAA 156487 || ||||| | ||||| || ||||||||||| |||||||||||| |||| |||||| Sbjct 1298 TCCGATTTTCTGGGACCGGTAAATATTGGTTCTGAAGAAATGGTGTCTATAAATGAA 1242 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 631146696359240