Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028961.1 Length=55094 Score E Sequences producing significant alignments: (Bits) Value seq12370 93.3 1e-14 >seq12370 Length=1162 Score = 93.3 bits (102), Expect = 1e-14 Identities = 118/160 (74%), Gaps = 2/160 (1%) Strand=Plus/Plus Query 40712 CCGCCGTACTACGGGCTGCGGGATTACGGCGCTGAGGGGCAGTACGGGCTGGAGGAATCG 40771 |||||||| | ||| || || || ||||||| || || ||| |||||||||| |||| Sbjct 14 CCGCCGTATTTCGGCCTCCGCGACTACGGCGTCGATGGACAGATCGGGCTGGAGCCATCG 73 Query 40772 CCTGCCGCATATGTCGAGACGATGCGCGC-GTTGTTCGCCGAACTGCGCCGCGTGCTGGC 40830 || | | || ||||| | || | || | ||||| || | |||||||| ||| Sbjct 74 CCAGAGGAATTCGTCGACGCCCTG-GTGCAGGTGTTCCGGGAGGTTCGCCGCGTCCTGCG 132 Query 40831 CGACGACGGCACACTGTGGCTCAACCTCGGCGACAGCTAC 40870 || |||||||| ||||||| |||||||||||||||||| Sbjct 133 GGATGACGGCACCGTGTGGCTGAACCTCGGCGACAGCTAC 172 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 176104847863008