Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028978.1 Length=60609 Score E Sequences producing significant alignments: (Bits) Value seq1923 96.9 1e-15 >seq1923 Length=5946 Score = 96.9 bits (106), Expect = 1e-15 Identities = 138/191 (72%), Gaps = 10/191 (5%) Strand=Plus/Plus Query 54896 CAGACGCTTGCGCAG--GCGCAGCAGATCGCCGATCTGCCTTTCGTCTATCCGCATGTGG 54953 ||| ||| || |||| ||||| || |||||| | || ||||| ||| |||| Sbjct 3374 CAGGCGCATGAGCAGCTGCGCAACA--TCGCCGCGATCCCGTTCGTTGGGCCGTGGGTGG 3431 Query 54954 CGCTGATGCCCGATGCGCATTTCGGCAAGGGCAGCAGTGTCGGCACGGTGATCCCGACCG 55013 | ||||||| || | ||| | ||||||||| | |||||| |||||||||||||| Sbjct 3432 CCGTGATGCCGGACGTGCACCTGGGCAAGGGCGCGACCGTCGGCTCGGTGATCCCGACCC 3491 Query 55014 AGGGCGCCGTCATTCCCGCCGCGGTGGGTGTCGATATTGGCTGCGGCATGATCGCGGCC- 55072 || || |||| || ||||| || || ||||| || |||||||||||| |||||| Sbjct 3492 GCGGTGCGATCATCCCGGCCGCAGTCGGCGTCGACATCGGCTGCGGCATG---GCGGCCG 3548 Query 55073 --CGCACCACG 55081 ||||||||| Sbjct 3549 TACGCACCACG 3559 Score = 89.7 bits (98), Expect = 2e-13 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 55277 CAGCTCGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGACCACCTCGAC 55336 ||||| ||||||||||| |||||||| ||||||||||| |||||||| ||| | |||| Sbjct 3764 CAGCTGGGCACGCTGGGTGGCGGCAACCACTTCATCGAACTGTGCCTGGACGAGACCGAC 3823 Query 55337 CGGGTGTGGTTGTTCCTGCACTCAGGTTCTCGTGGCGTCGGTAACAAGATCG 55388 ||||||| || | |||||| || || || ||| ||| ||| ||||| Sbjct 3824 ACGGTGTGGGTGATGCTGCACAGCGGATCGCGCGGCACCGGCAACCTGATCG 3875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 193745399954778