Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028980.1 Length=62181 Score E Sequences producing significant alignments: (Bits) Value seq13677 120 1e-22 seq2903 86.0 2e-12 >seq13677 Length=1044 Score = 120 bits (132), Expect = 1e-22 Identities = 135/178 (76%), Gaps = 2/178 (1%) Strand=Plus/Minus Query 33082 CTGTGGGACGCGATCATGCGCGGGACCTGGGACTGGGCGGAGCCTGGGGTGCTGTTCATC 33141 ||||||||| ||||||| | ||| | |||| || ||||| || | | | ||| Sbjct 641 CTGTGGGACATGATCATGGTCTCGACGTACGACTACGCCGAGCCGGGCTTCATCCTGATC 582 Query 33142 GAC-GCGATCAACCGCATGAACAACCTCTGGTACTGCGAGACCATCGCCGCCACCAACCC 33200 ||| ||| ||||| ||||||||| ||||| |||||||||||| ||| |||||||| Sbjct 581 GACCGCG-TCAACGAGATGAACAACAACTGGTGGTGCGAGACCATCCGCGCGACCAACCC 523 Query 33201 CTGCGGTGAGCAACCGCTCCCGCCCTACGGTGCCTGCTTGTTGGGCTCCTTCAACTTG 33258 ||||| ||||| ||||| ||||| ||||| |||||| || ||||||| ||||| || Sbjct 522 GTGCGGCGAGCAGCCGCTACCGCCGTACGGCGCCTGCCTGCTGGGCTCGGTCAACCTG 465 >seq2903 Length=4332 Score = 86.0 bits (94), Expect = 2e-12 Identities = 116/159 (73%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 33073 GCCCGGGCGCTGTGGGACGCGATCATG-CGCGGGACCTGGGACTGGGCGGAGCCTGGGGT 33131 || || | |||||||||| | | ||| || || ||| |||| || ||||| || | Sbjct 381 GCGCGCGAGCTGTGGGACACCGTGATGACGTCGG-CCTACGACTTCGCCGAGCCGGGCAT 323 Query 33132 GCTGTTCATCGACGCGATCAACCGCATGAACAACCTCTGGTACTGCGAGACCATCGCCGC 33191 || ||| | ||| |||||| |||||||| | ||||||||| ||||||||| Sbjct 322 CCTCTTCCTGGACCGCATCAACGAGGACAACAACCTGCGCTACTGCGAGGACATCGCCGC 263 Query 33192 CACCAACCCCTGCGGTGAGCAACCGCTCCCGCCCTACGG 33230 |||||| |||||||| ||||| || || ||| ||||||| Sbjct 262 CACCAATCCCTGCGGCGAGCAGCCCCTGCCGTCCTACGG 224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 198768269883018