Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_028999.1 Length=309208 Score E Sequences producing significant alignments: (Bits) Value seq15098 104 5e-17 seq2848 96.9 7e-15 seq5213 91.5 3e-13 >seq15098 Length=937 Score = 104 bits (114), Expect = 5e-17 Identities = 71/79 (90%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 294859 TATGGTGCCGTCAGAGGGATTCGAACCCGTCGACCTACTGATTACAAGTCAGTTGCTCTA 294918 |||||||||| || ||| ||||||||| ||||||||||||||||||||||||||||| Sbjct 868 TATGGTGCCGGCACCAGGAGTCGAACCCGG-GACCTACTGATTACAAGTCAGTTGCTCTA 810 Query 294919 CCAGCTGAGCTATAACGGC 294937 |||||||||||||| |||| Sbjct 809 CCAGCTGAGCTATACCGGC 791 >seq2848 Length=4404 Score = 96.9 bits (106), Expect = 7e-15 Identities = 69/78 (88%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 294860 ATGGTGCCGTCAGAGGGATTCGAACCCGTCGACCTACTGATTACAAGTCAGTTGCTCTAC 294919 ||||||||| || | |||||||||| || |||||||||||||||||||||||||||||| Sbjct 3879 ATGGTGCCGGCACACGGATTCGAACT-GTGGACCTACTGATTACAAGTCAGTTGCTCTAC 3821 Query 294920 CAGCTGAGCTATAACGGC 294937 || ||||||||| |||| Sbjct 3820 CAACTGAGCTATGCCGGC 3803 >seq5213 Length=2642 Score = 91.5 bits (100), Expect = 3e-13 Identities = 206/304 (68%), Gaps = 12/304 (4%) Strand=Plus/Plus Query 234549 CATCATCCCACCGCACGGCTTTATCCTGACTCGTTCTGTGGAGTACGTCCGTATTCCGCG 234608 ||||||||| ||| || |||| ||| | || | ||||||||| |||| || ||||| Sbjct 616 CATCATCCCGCCGAACAGCTTCGCGCTGGCGCGCACGGTGGAGTACTTCCGCATCCCGCG 675 Query 234609 TAACGTACTGGCACTGTGCATCGGTAAGTCGACTATCGCCCGTGTGGGCATCAACTGTCT 234668 | |||| ||||| | || ||| || ||| || ||||||| | ||| Sbjct 676 CGATACCCTGGTGGTGTGCCTGGGCAAGAGCACCTACGCGCGCTGCGGCATCATC-GTCA 734 Query 234669 --GTGCACTCCGATCGAACCGGAATGGGAAGGCCACATCACCTTCGAATTCCACAACACT 234726 ||| || ||| | || |||||||||||||||||| ||||| | |||||| |||||| Sbjct 735 ACGTG-ACCCCGCTGGAGCCGGAATGGGAAGGCCACGTCACCCTGGAATTCAGCAACAC- 792 Query 234727 CTCG-ATCAACCGAACACCTTCTATGCCAACGAAGGTGTACTGCAACTGGTCTTCATC-- 234783 | || | ||| | |||| ||||||||||| || ||| || | ||| || Sbjct 793 CACGCCGCTGCCGGCGCGCATCTACGCCAACGAAGGCGTGGCGCAGATGCTGTTCTTCCA 852 Query 234784 ----GAAGGCGATGAGCCGTGCATTACTTCGTATGCCGATCGTGGCGGTAAGTACCAGGG 234839 | | |||||| ||| || ||||| |||||||||||| ||||||||||| Sbjct 853 GGCGGCCGCCGATGACGTCTGCGAGACCTCGTACCGCGATCGTGGCGGCAAGTACCAGGG 912 Query 234840 TCAG 234843 ||| Sbjct 913 CCAG 916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 988883913073467