Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_029003.2 Length=29733 Score E Sequences producing significant alignments: (Bits) Value seq1131 280 3e-71 seq8149 170 4e-38 seq24300 163 5e-36 seq8333 102 2e-17 >seq1131 Length=8710 Score = 280 bits (310), Expect = 3e-71 Identities = 802/1213 (66%), Gaps = 35/1213 (3%) Strand=Plus/Plus Query 1591 GTCAATGCCGATGTATTCGACGTTGTATTTCTCAGTGAGCCTGCGGATGGCTTCTGCCTG 1650 ||| ||||||||||| |||||| | |||| |||| | ||||||||| |||||||| Sbjct 4176 GTCGATGCCGATGTAGGTCACGTTGAACTTCTGCGTGATCGCGCGGATGGCCTCTGCCTG 4235 Query 1651 CGCGGCAAAGTCCATGCCTTTCCACTGGTGACGCTCCAGCATGCGAAACTTGCCACCCGA 1710 | | |||||| || || |||| || || | ||||| || |||||||| |||| Sbjct 4236 CTGCTCGAAGTCCGCCCCCTTGAACTGCTGCCGGTGCAGCAGCCGGAACTTGCCGCCCGG 4295 Query 1711 AACCACCGGCGGCGCGAGTACGACACATC-CGGCACTGTCGCCGGTGTGGGACGGGTCGT 1769 || |||||| || | || || || | | ||| ||||||||||| || ||||||| Sbjct 4296 CGCCCGCGGCGGTGCAATCACCAC-CAGCGCCGCAGCATCGCCGGTGTGCGATGGGTCGT 4354 Query 1770 AGCCAATCCAGACCGG---GCGCGAGCCGAATGGATGGTCGGCGAACGGGGCGAAGTCCT 1826 | || | ||| ||||| | ||| || | || | ||| ||||| | | ||| Sbjct 4355 ACCCCACCCACACCGGAAAGTGCG---CGTACGGCCGCGTGGCAAACGGCTTGCAATCCG 4411 Query 1827 CCCATGTTTCCATCACGTCGACCATGCAGCGCTGCAGCTCCTCGAACGGGAATACCGATG 1886 |||| | ||| ||| |||||||||| ||||| |||| || || ||| | | Sbjct 4412 CCCACGCCTCCCAGCTGTCCACCATGCAGCCCTGCATTTCCTTGAGCGTGAACAGGCTAG 4471 Query 1887 CCTTATCGTCGACAAACTCGCACATAAACAGGTTCTTAAAGTCCTCATCACTGTTTTCGC 1946 | | ||||||| ||||||||||| ||||||| || || || ||| |||| Sbjct 4472 CGCTGTCGTCGATGAACTCGCACATGTACAGGTTGGCGAACTCTTCCGGGCTGCTTTCTT 4531 Query 1947 GTCTGAGCTGGTCGAGGTCGAACAGGGTGCAGCCACCGGCAAG-GGCGTCCTCAATAGTG 2005 | |||| ||||| |||||||||| ||||||| | ||| | |||||||| || || Sbjct 4532 CCCGCAGCTCGTCGATGTCGAACAGGTTGCAGCC-CAGGCGTGCCGCGTCCTCGATCGTC 4590 Query 2006 ACAATCTGCCGCCACTGTCCGTCAGCGCAAAGAAGCCCACCGGCGAGCGCGCTGTGACTG 2065 || | | ||||||| | || || | | | || ||| ||||| ||| || Sbjct 4591 ACCACGTCGCGCCACTTGCGATCGGCCCCGCGGATGCCGCCGCGCAGCGCTGCGTGGCTC 4650 Query 2066 ATGTCGATTTCGATGCGGTCAGCGGCACTGGC-GCGCCCCTTGTTGAACAGCTCGCCAGA 2124 | |||||| |||| || || || || ||| || |||||| | | ||| Sbjct 4651 ACGTCGATGGTGATGGCCTC----GCCCTTGCTGCGGCCTTTGTTGCGCTCCGTGCCGTT 4706 Query 2125 CCAGAAGGGGTAAGCGCCGTGCGCCAGCGTGGAAGGTGTCGAAAAGTAAGTTGAGCGCAG 2184 |||||| || || || | |||| || | || || || || ||||| || |||| Sbjct 4707 CCAGAACGGATACGCCTCATGCGACATGGCCGACGGGGTGGAGAAGTACGTCTTGCGCCA 4766 Query 2185 ATGCTTTTGCGAGGCCATGCCCGATGCGACTTTGCGCAGCTTCTGAAAATTCGGGATCCA 2244 |||||| |||| |||||| ||| || || ||| |||| |||| || | ||| Sbjct 4767 ATGCTTGTGCGTCGCCATGGCCGCGGCCACCTTGTTGAGCTGGCGAAAGCCCGACACCCA 4826 Query 2245 GAATATTTCATCGACATACAGGTCGCCGTTATGGCTCTGTGCGGTGTTGGAATTGGTGCC 2304 || | ||||||| || | ||||||| | | | ||| || || || | ||||||||| Sbjct 4827 AAAGAACTCATCGAAGTAGAAGTCGCCGCTGCGCCCCTGCGCCGTCTTCGCATTGGTGCC 4886 Query 2305 GAGAAAAATCAGCTTTGCGCCGTTGTTGCCGATGACAATCGGGTCGCCGGTCAGGTCGAC 2364 | ||| ||||| || |||| | | | | || || ||||||||| |||| || || Sbjct 4887 CAAAAAGTGCAGCTCCGCACCGT--TCGAC-AGCACGATAGGGTCGCCGCTCAGCTCCAC 4943 Query 2365 GTCAACCAGTCGCGCAAACTGGATGATGTATTCCCGGAACACGTAAGCCTGCGTTTTACT 2424 | | ||||| | ||||| | ||||| | |||| || ||||||| || Sbjct 4944 GCCCACCAGCCCGGCAAAGGCCAGCATGTACGTCTTGAACTGGTGCGCCTGCGCCTTTGA 5003 Query 2425 GGCCGACAGAAAAATCTGGTTATGGCCGGTCTTGAGCGCGCGCAGCAGTGCCTCGCGGGA 2484 || || || |||||||| || | || | ||| ||||| | ||| |||||||||| Sbjct 5004 TGCAGAAAGGAAAATCTGATTGCGCCCCTCCGTGATGGCGCGTATCAGCGCCTCGCGGGC 5063 Query 2485 AAAGTAGAACGTCGCGCCAATCTGGCGGGATTTGAGAATATCGCGAATACGGTGCGCCAG 2544 |||||| | || || || ||||| || || || || | || | || | || | | Sbjct 5064 AAAGTACCAAGTGGCCCCGATCTGCCGCGACTTCAGCAGCAGCCGCGTGCGCTCCGTCTG 5123 Query 2545 TCCTGCCCGGTACCACTGCAACTGGTAT-TCGAAAG-ACTGGTCGAAGAAAATTTCTTCC 2602 | ||| |||||| | || || | |||| ||| ||| ||| || || | Sbjct 5124 CGCCTCCC---ACCACTTC--GCGGCATACCCAAAGTTCTGCTCGTGGAAGATCTCCAGC 5178 Query 2603 AGCTTTGCGACAGCCTCATCGCTGAAAAAGTTCTTTTTCGGC---CTCTTACGCTCCCCC 2659 ||||| ||| ||| ||| |||| ||| |||||| | ||| || || | Sbjct 5179 AGCTTCTCGATCTGCTCTTCGGTGAAGTGGTTGCGCTTCGGCGTGCGCTTGGGCGCCGC- 5237 Query 2660 TTGTTACGGTTGGCAACGTTGGGGTTAAGGTCGGCCTCGTTGCCGGT-CTGGCT-GTAGC 2717 ||| || ||||| ||||||||| | |||| | || ||||| || || || ||||| Sbjct 5238 --GTTGCGCGCGGCAATGTTGGGGTTCAAGTCGCCTTCCTTGCCCGTGCT--CTGGTAGC 5293 Query 2718 GGTTGACGCGCGCCAGTCGCTCAATCTGCCGCCCGAGCAGGTCAATCTCTTTGAAGTCGC 2777 | | ||||||||| ||||| | |||||| || |||||||| ||||| |||||||||| Sbjct 5294 GCTCCACGCGCGCCGTGCGCTCCAGCTGCCGGCCCAGCAGGTCGATCTCCTTGAAGTCGC 5353 Query 2778 CGCCTGACTTTTG 2790 |||| | ||| || Sbjct 5354 CGCCCGTCTTCTG 5366 Score = 158 bits (174), Expect = 2e-34 Identities = 242/345 (70%), Gaps = 0/345 (0%) Strand=Plus/Plus Query 377 CGGTACGCGGTGTGCATCCATCAGGTCGGCGGCGCTGGCTTTCTTGATGTTGAAAAAGTC 436 ||| |||||||| || ||| || |||||| ||||| ||||||||| | ||||| Sbjct 2965 CGGCACGCGGTGGGCGGCCAGCACGTCGGCCATGCTGGTGTTCTTGATGGCGGCGAAGTC 3024 Query 437 ATCCTTTGTGGCGACTTCGCTCAATGGCACGATTTTGATGCCGTCCGGTTTTCCGCCGGG 496 || || | ||||| ||||| | || | | || | |||||||| || ||||| || Sbjct 3025 GTCTTTGGCGGCGATCTCGCTGATGGGGATCAGCTTCAAGCCGTCCGCCTTGCCGCCAGG 3084 Query 497 AGCGTAGAAAAACAGGTTTTTAAAGTTGCCGAGCCCTTTCGAGTTACGCATCGCCTCGCG 556 |||| | |||||||| |||||||| |||| || || || |||| | |||||| Sbjct 3085 CGCGTGCAGGAACAGGTTGCGGAAGTTGCCCGGCCCCTTGGACTTGCGCAGCTGCTCGCG 3144 Query 557 CAGCGATTCGACGTCGGTCGCGCTCTGCGCCGGGTCAGTCACATACATGATGTAACCTGC 616 ||||| || |||||||| | |||| || | ||| ||| ||||||||| | || || Sbjct 3145 CAGCGTGTCCACGTCGGTGGTGCTCACCGTGGCGTCGCTCAGGTACATGATGAAGCCGGC 3204 Query 617 GTGCGCGCCGTTCTGGTAATACTTGCGGCGGAACAGCGTCGCGGATTCATTCAGCCATGC 676 || |||||||| ||| ||| |||||| |||| || |||| || ||||| || Sbjct 3205 ATGGCTGCCGTTCTCGTAGTACCGGCGGCGAAACATGGTGGCGGCCTCGTTCAGGTGGGC 3264 Query 677 GGAATTAAGCGCGCTGAGATATTCAGGCAGGCCGTAAATCTCCTG 721 || | | |||||| || || || |||| ||| || | |||||| Sbjct 3265 CGACTGCAACGCGCTCAGGTACTCCGGCACGCCATACACCTCCTG 3309 >seq8149 Length=1767 Score = 170 bits (188), Expect = 4e-38 Identities = 356/524 (68%), Gaps = 10/524 (2%) Strand=Plus/Minus Query 14522 GCACTCGGCCTGCGTGCTTACATCGACCAGACTGTCGGCTGGCACAAAACCCTGTCTAAC 14581 || || |||||||| || |||||||||| ||||||||||| || ||||| ||| Sbjct 1625 GCCCTGGGCCTGCGCGCGCGCATCGACCAGGAGCAGGGCTGGCACAAGACGCTGTCCAAC 1566 Query 14582 GTT--GGTGTACAGGGAGTTACCGGCATCAGCGCCTCA-GTGTTCTGGGATTTGCAGGCA 14638 || | ||| ||| ||| |||||| ||| | ||| ||||| |||| Sbjct 1565 GTGCCGTTGTC--GGGCGTTCTGGGCATCT-CGCGCGATGTGCATTGGGACCTGCAAAGC 1509 Query 14639 TCCGGCACCGATGCTGACCTTCTCAACGAGGCCGGGGTTACAACTCTGGTACGCAAGGAC 14698 ||| ||||| || | | | |||||| ||||||| | || || ||| | | | | Sbjct 1508 CCCGATACCGAGGCCGGCATCCTCAACCAGGCCGGCATCACCACGCTGATCCAGAGCCAG 1449 Query 14699 GGTTTCCGCTTCTGGGGTAACCGCACCTGCTCAGATGACCCGCTTTTTCTGTTTGAGAAC 14758 || |||||||||||| ||||||||| | || | ||| || | || ||| | Sbjct 1448 GGCCACCGCTTCTGGGGCTCGCGCACCTGCACGGACAGCGAGCTGTTCCGCTTCGAGTCC 1389 Query 14759 TACACCCGTACCGCGCAGGTACTGGCCGACACGATGGCTGAAGCGCACATGTGGGCGGTC 14818 | || ||||||||||| ||||||||||| ||||| || ||||| | ||||| || Sbjct 1388 AGCGTGCGCACCGCGCAGGTGCTGGCCGACACCATGGCCGAGGCGCATTTCTGGGCCGTG 1329 Query 14819 GATAAGCCCATTACCGCCACGCTCATTCGTGACATTGTTGACGGCATCAATGCCAAATTC 14878 || |||||||| | ||| || | ||||| | || |||||||| |||| ||| Sbjct 1328 GACAAGCCCATGCACCCCAGCCTGGTCAAGGACATCCTGGAAGGCATCAACACCAAGTTC 1269 Query 14879 CGCGAGCTGAAAACAAACGGCTACATCGTGGACGGTGAATGCTGGTTCGACGAGGAATCG 14938 ||||| ||||| | ||||||||| ||||||| | ||||| |||||| || | Sbjct 1268 CGCGAACTGAAGGCCCTGGGCTACATCCTGGACGGCAAGGCCTGGTACGACGA--AACGG 1211 Query 14939 --AACGACAAGGAGACCCTGAAAGCCGGGAAACTGTATATCGACTACGACTATACGCCGG 14996 ||||| | | || || || ||||| || ||| | ||||||||||| ||||| | Sbjct 1210 TCAACGAGACCGCCACGCTCAAGGCCGGCAAGCTGGTGCTGGACTACGACTACACGCCCG 1151 Query 14997 TTCCGCCACTGGAGAGCATGACCATGCGCCAGCGTATCACCGAT 15040 | || || |||||| | || | |||||||| ||||||||| Sbjct 1150 TGCCTCCGCTGGAGGACCTGGGTTTTCGCCAGCGCATCACCGAT 1107 >seq24300 Length=517 Score = 163 bits (180), Expect = 5e-36 Identities = 180/240 (75%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 28687 TTATGAGAATCAATATCACGTTGGATAAAGAACAAAAAATTAGTCAGGCAATATTGGATG 28746 ||||| | || | || | | | |||||||| || || || || ||||||| | |||| | Sbjct 257 TTATGCGCATTGAAATAATGATCGATAAAGAGCAGAAGATAAGCCAGGCAACACTGGAAG 198 Query 28747 CACTTGAGGCAGAACTGTACCGCAACCTTCAACCTATTTACCCAAAGACTGCTATCCGCA 28806 | ||||| | || || ||||| || | | ||| |||| ||||| || || ||||||| Sbjct 197 CCCTTGAATCCGAGCTTTACCGAAATTTGCGCCCTCTTTATCCAAACACGGCAATCCGCA 138 Query 28807 TTCGCAAAGGTTCCGCAAATGGCGTTGAGCTAAGCGGTTTGAAACTGGACGAAGATAAAA 28866 | || || || ||| || ||| | ||||| ||||| || ||||||||||||||||||| Sbjct 137 TACGTAAGGGAAGCGCTAACGGCCTGGAGCTGAGCGGCTTAAAACTGGACGAAGATAAAA 78 Query 28867 AACGAGTAATGGAAATCATGCAGCAGGTATGGGAGGACGATAGCTGGCTGCATTGACAAA 28926 | || ||| |||| || |||||||||| |||||| || || |||||||||||| ||| Sbjct 77 AGCGGGTATTGGAGATTTTGCAGCAGGTCTGGGAGAGTGACAGTTGGCTGCATTGATAAA 18 >seq8333 Length=1724 Score = 102 bits (112), Expect = 2e-17 Identities = 334/503 (66%), Gaps = 21/503 (4%) Strand=Plus/Minus Query 14521 TGCACTCGGCCTGCGTGCTTACATCGACCAGACTGTCGGCTGGCACAAAACCCTGTCTAA 14580 ||| || |||||||| || | | || ||| | ||||||||||| || | || || Sbjct 1166 TGCCCTGGGCCTGCGCGCCAAGCTGGATCAGGAGATTGGCTGGCACAAGTCCATTTCCAA 1107 Query 14581 CGTTGGTGTACAGGGAGTTACCGGCATCAGCGCCTCA-GTGTTCTGGGATTTGCAG-GCA 14638 | | | || | || || ||||||| ||| | ||||||| || ||||| || Sbjct 1106 CATGGTGGTCAACGGCGTGGAAGGCATCA-CGCGCGATGTGTTCTTCGACCTGCAGAGC- 1049 Query 14639 TCCGGC-ACCGATGCTGACCTTCTCAACGAGGCCGGG-GTTACAACTCTGGTACGCAAGG 14696 ||||| | |||||| | | || ||| || || || || || ||| | || | Sbjct 1048 -CCGGCCAGCGATGCGGGCTACCTGAAC-AGCAAGGAAGTCACCACGCTGATTCGGCGCG 991 Query 14697 ACGGTTTCCGCTTCTGGGGTAACCGCACCTGCTCAGATGAC--CCGCTTTTTCTG-TTTG 14753 |||| | ||||||||||||| ||||||||| | | | | | ||| |||| Sbjct 990 ACGGATACCGCTTCTGGGGTTCGCGCACCTGCGAGGCCGCCGGCGGAAAGTTCGCCTTTG 931 Query 14754 AGAACTACACCCGTACCGCGCAGGTACTGGCCGACACGATGGCTGAAGCGCACAT-GTGG 14812 || ||||||||| ||||| ||||| ||||||||||| || || ||||||||| | || Sbjct 930 AGCCCTACACCCGCACCGCCCAGGTGCTGGCCGACACCATCGCAGAAGCGCACTTCGTCT 871 Query 14813 GCGGTCGATAAGCCCATTACCGCCACGCTCATTCGTGACATTGTTGACGGCATCAATGCC 14872 | |||| |||||||| | || |||| | || ||||| | | | |||||| | Sbjct 870 TC-ATCGACAAGCCCATGCACCCCTCGCTGGTGCGCGACATGCTGGGCTACATCAACAGC 812 Query 14873 AAATTCCGCGAGCTGAAAACAAACGGCTA---CATCGTGGACGGTGAATGC-TGGTTCGA 14928 |||||||| ||| | |||||| ||||| || | ||||| | ||||| Sbjct 811 CGCTTCCGCGATCTGGTCAATGGCGGCTATCTCATCGGGGCC----AATGCGTACTTCGA 756 Query 14929 CGAGGAATCGAACGACAAGGAGACCCTGAAAGCCGGGAAACTGTATATCGACTACGACTA 14988 | || ||||| |||||| |||| | ||| ||| | ||| ||||||||| Sbjct 755 CCCCGATCTGAACGGCAAGGAAGACCTGGCCGTCGGCCGCCTGCAGATCAGCTACGACTA 696 Query 14989 TACGCCGGTTCCGCCACTGGAGA 15011 |||||||| ||||| ||||||| Sbjct 695 CACGCCGGTGCCGCCGCTGGAGA 673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 94983897437010