Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_029044.1 Length=154434 Score E Sequences producing significant alignments: (Bits) Value seq1633 93.3 4e-14 seq19878 89.7 5e-13 seq6617 86.0 6e-12 seq6008 84.2 2e-11 >seq1633 Length=6651 Score = 93.3 bits (102), Expect = 4e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 95741 ATGCGAAGGTAGCTCAGCTGGTAGAGCGCCACCTTGCCAAGGTGGAGGTCGCGGGATCGT 95800 ||||||| |||||||| ||||||||||| ||||||||||||| ||||||||||| ||| Sbjct 6534 ATGCGAAAATAGCTCAGTTGGTAGAGCGCGACCTTGCCAAGGTCGAGGTCGCGGGTTCGA 6593 Query 95801 AACCCGTTCTTCGCTC 95816 |||||| ||||||| Sbjct 6594 GCCCCGTTTTTCGCTC 6609 >seq19878 Length=680 Score = 89.7 bits (98), Expect = 5e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 113101 GGCCCGGGCCGTGGCTCCGCCGGTGGCTCGCTGGTCACCTACGTCATGGGCATCACCTCG 113160 ||||||||||| || || | | ||| |||||||| |||| || || |||||| Sbjct 285 GGCCCGGGCCGCGGTTCGGGTGCTGGTTCGCTGGTGGCCTATGTACTGAAGATCACCGAT 226 Query 113161 ATCGACCCGATCAAGTACGACCTGATGTTCGAGCGCTTTATCAACCCGGACCGCCCCGAC 113220 |||||||| | ||||||||| ||||||||||||| ||||||| || || | Sbjct 225 CTCGACCCGCTGGCCTACGACCTGCTGTTCGAGCGCTTCCTCAACCCTGAACGTGTTTCC 166 Query 113221 TTCCCCGACATCGACGTCGACTTC 113244 | |||||| |||||||||||||| Sbjct 165 ATGCCCGACTTCGACGTCGACTTC 142 >seq6617 Length=2135 Score = 86.0 bits (94), Expect = 6e-12 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 114154 ACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCCGCACCGCCAAGGAGCTGGCCGGG 114213 |||||||| ||| ||||||||||||||||| |||| | |||||| ||| ||||| ||| Sbjct 1569 ACCTACGGGATCATGGTCTACCAGGAGCAGGTGATGCAGACCGCCCAGGTGCTGGGCGGC 1628 Query 114214 TTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAGATGGAG 114270 | | | | ||||| ||||| | |||| | ||| |||||||||||| | ||| Sbjct 1629 TACTCGCTGGGCGGCGCCGACCTCTTGCGCCGTGCCATGGGCAAGAAGAAGGTCGAG 1685 >seq6008 Length=2324 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 114154 ACCTACGGCATCCTGGTCTACCAGGAGCAGCTGATCCGCACCGCCAAGGAGCTGGCCGGG 114213 |||||||| ||| |||| |||||||||||| |||| | |||||| ||| ||||| ||| Sbjct 197 ACCTACGGGATCATGGTGTACCAGGAGCAGGTGATGCAGACCGCCCAGGTGCTGGGCGGC 138 Query 114214 TTCACCCCGGGCGAGGCCGAGCGGCTGCGTAAGGGCATCGGCAAGAAGAAG 114264 | || || || | ||||| |||||| || ||| |||||||||||| Sbjct 137 TACAGCCTCGGTGGTGCCGACATGCTGCGCCGGGCCATGGGCAAGAAGAAG 87 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 493841319665360