Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_029066.1 Length=48666 Score E Sequences producing significant alignments: (Bits) Value seq4263 102 3e-17 >seq4263 Length=3133 Score = 102 bits (112), Expect = 3e-17 Identities = 244/363 (67%), Gaps = 6/363 (2%) Strand=Plus/Plus Query 24632 CAGCGCGCCTGGTACGCCGCCAAGGAAAAGACCCTCGGCGACGACATGAAGCGGGAATAC 24691 |||||||||||||||| | |||| || |||||| | ||||||||||| || Sbjct 848 CAGCGCGCCTGGTACGTCAAGAAGGCCGCCGACCAGGGCGACAAGATGAAGCGGGAGCAC 907 Query 24692 CCGTCGATCCCTGCCGAGGCATTCCAGCAGAGCATCGAGGGCGCCTACTACGCCAAGCAA 24751 ||| | || | ||||||||| || ||||| ||||||||| || |||| ||| | Sbjct 908 CCGAGCACGCCCGAGGAGGCATTCGAGGCGAGCACCGAGGGCGCGTATTACGGGAAGGAG 967 Query 24752 TTCGCCAAGCTG-TACGCA-CAGCAGCGAATCGGCGTGCTGCCAGATAACAGTCACCAGC 24809 | ||| || | | || | ||| ||| ||| ||| ||||| ||| | | Sbjct 968 ATGGCC--GCCGCTTCGGAGCAGGGGCGCATCTGCGACCTGCCCATCAACCCGACCGTCC 1025 Query 24810 CGGTGCACACCTTCTGGGACATCGGCGTGGGCGACTCAACGGCGATCTGGTTCGTTC-GG 24868 || | ||||| ||||||||||||||| ||||| ||||| ||||||||| | | || Sbjct 1026 CGATTCACACGTTCTGGGACATCGGCCGTAGCGACAGCACGGCCATCTGGTTCATGCAGG 1085 Query 24869 ATCGTTGGCGATGAGTTCCACGTCGTCGACTACTACGAGAACAGCGGCGAAGGCCTGCGG 24928 | | | || | | || ||||||||| ||||||| | ||| || || Sbjct 1086 AGAACGGCCCCTG-GCTGGACTTCGTCGACTTCTACGAGGCCGACGGGTTCGGGGTGTCT 1144 Query 24929 CACTACATGAAGGTGCTTAAGGAGCGCGGCTACACGTACGGCGACCACTGGGGGCCGCAC 24988 |||||| ||||||| ||||| |||||| ||||||| | |||| |||||||| Sbjct 1145 CACTACGCTCAGGTGCTGAAGGACAAGGGCTACCTGTACGGCAAGCACTACTGGCCGCAC 1204 Query 24989 GAC 24991 ||| Sbjct 1205 GAC 1207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155543928761304