Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq3205 197 1e-45 seq2111 105 5e-18 >seq3205 Length=3996 Score = 197 bits (218), Expect = 1e-45 Identities = 322/453 (71%), Gaps = 23/453 (5%) Strand=Plus/Plus Query 125924 TTATACCGCAATAGGTGCTTTAATAGCAGGGTGTGATTCATAATTTATCAATTCTAAATC 125983 |||||| |||| ||||||||||||||||| || || |||||| || | ||| | ||| Sbjct 2023 TTATACTGCAACTGGTGCTTTAATAGCAGGATGCGACTCATAACCTACAATTTCAACATC 2082 Query 125984 TTCATAATTAATATCAAA-AATTGATTTA--TCTGTATTAATTTTTAATTG----AGGTG 126036 |||| | || | |||||| || | |||| |||| ||| | ||| ||||| ||| | Sbjct 2083 TTCAAATTTGAAATCAAATAAGTCTTTTACTTCTGGATTTAGTTTCAATTGGCATAGG-G 2141 Query 126037 GTAGA---TAAC-TATCTCTTGATAATTGTGTATGTATTGCATCCATATGATTGGAATAA 126092 ||| | | || | || |||| | ||||| ||| || | ||||||| |||| Sbjct 2142 GTAAAGGTTCACGTGTCAATTGA-AGTTGTGCTTGT------TCAAAATGATTGACATAA 2194 Query 126093 ATATGTGCATCTCCAAATGTATGAATGAATTCACCCACCTCAAGTCCACATTCTTTTGCA 126152 | ||| | ||| || ||| || || ||||| || | | || || ||| ||| Sbjct 2195 AGATGCGTATCACCGCCTGTCCAAACAAAGTCACCGACTCCTAAACCGCACACTTGAGCA 2254 Query 126153 ACAAGATGTGTCAGTAAAGCATAACTTGCAATATTGAAAGGAACACCTAAAAATATATCA 126212 | | || || |||||||||||||| ||||| || |||||||| |||||||| | || Sbjct 2255 ATCATGTGAGTGAGTAAAGCATAACTGGCAATGTTAAAAGGAACCCCTAAAAACACGTCT 2314 Query 126213 GCACTTCTTTGATATAATTGACAATTTAATTTACCCTCTTGTACGTAAAATTGAAACATT 126272 ||||| | |||||| | || || ||||| ||||||||| |||||||||| | Sbjct 2315 GCACTACGTTGATAAAGCTGGCATGACAATTTGTTATCTTGTACGAAAAATTGAAAAAGC 2374 Query 126273 GTGTGGCAAGGTGGTAATGCCA-TTGAATCGA-TTTCAGTAGGATTCCATGCTGAAACAA 126330 ||||||||||||||||| |||| ||| || | |||| | |||||||| |||||| || Sbjct 2375 GTGTGGCAAGGTGGTAAAGCCACTTG--TCCAGCTTCATTTGGATTCCAGCCTGAAATAA 2432 Query 126331 TGTGACGTCGAGAGTTTGGATTGGTTTTAATTT 126363 | ||| || || || ||||||||||| |||| Sbjct 2433 TTAAACGGCGTGAATTCGGATTGGTTTTGATTT 2465 >seq2111 Length=5547 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 126075 TCCATATGATTGGAATAAATATGTGCATCTCCAAATGTATGAATGAATTCACCCACCTCA 126134 || ||||| ||| ||| || || || || ||||| ||||| || || || ||| | Sbjct 3429 TCAATATGGTTGTTATAGATGTGCGCGTCACCAAAAGTATGGATAAAATCTCCCGGTTTT 3370 Query 126135 AGTCCACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATAACTTGCAATATTGAAAGGA 126194 | | || | | |||| | ||||| ||| |||||| ||| || || ||||| Sbjct 3369 AAATCGCAAACCTGAGCAATCATCAATGTCAATAATGCATAAGATGCTATGTTAAAAGGC 3310 Query 126195 ACACCTAAAAATATATCAGCACTTCTTTGATATAATTGACAATTTAATTTACCCTCTTGT 126254 || |||||||| ||||| || |||||||||||||| || || |||||| || ||| | Sbjct 3309 ACTCCTAAAAAGATATCGGCGCTTCTTTGATATAACTGGCAGGATAATTTGCCATCTGCT 3250 Query 126255 ACGTAAAATTGAAACATTGTGTGGCAAGGTGGTAATGC 126292 || ||||| ||||| | | |||||| ||||| | ||| Sbjct 3249 ACATAAAACTGAAAAAAGGCGTGGCAGGGTGGAAGTGC 3212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408421423136573