Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_029121.1 Length=151417 Score E Sequences producing significant alignments: (Bits) Value seq2111 91.5 1e-13 seq16081 84.2 2e-11 seq6125 84.2 2e-11 >seq2111 Length=5547 Score = 91.5 bits (100), Expect = 1e-13 Identities = 154/221 (70%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 125355 CCCCCATGCCACACAATGTTCCAGTTTTACGTAGGTAAAGACAACACGCTAAGCTGCAAG 125414 || || |||||| | | || |||||||| |||| | | ||| || |||| || Sbjct 3218 CCACCCTGCCACGCCTTTTTTCAGTTTTATGTAGCAGATGGCAAAT---TATCCTGCCAG 3274 Query 125415 ATGTATCAACGATCAGCAGACGTATTTTTAGGAGTACCATTCAATATCGCAAGCTACGCA 125474 | |||||| || || || | ||||||||||| || || || || ||| || ||| Sbjct 3275 TTATATCAAAGAAGCGCCGATATCTTTTTAGGAGTGCCTTTTAACATAGCATCTTATGCA 3334 Query 125475 CTATTGACTCACCTTATCGCAAAGATGACAGGGTTAAAACCCGGAAAATTCATTCATACC 125534 ||||||| | || || || | | |||||||| ||| | || || ||||| Sbjct 3335 TTATTGACATTGATGATTGCTCAGGTTTGCGATTTAAAACCGGGAGATTTTATCCATACT 3394 Query 125535 TTTGGTGACGCTCATATCTATAACAACCACATTGAAGCAGT 125575 ||||||||||| || |||||||||||||| |||||| |||| Sbjct 3395 TTTGGTGACGCGCACATCTATAACAACCATATTGAA-CAGT 3434 >seq16081 Length=872 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/73 (86%), Gaps = 1/73 (1%) Strand=Plus/Plus Query 110988 GAAGGATTCGAACCTCCGACACAGGGATTTTCAGCCCCCTGCTCTACCGACTGAGCTACC 111047 || ||| ||||||| ||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 370 GACGGAATCGAACCGCCGACACGGGGATTTTCAATCCCCTGCTCTACCGACTGAGCTACC 429 Query 111048 AGTCCAA-GGCGC 111059 | ||| ||||| Sbjct 430 TGGGCAACGGCGC 442 >seq6125 Length=2280 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 110980 TGGACTGAGAAGGATTCGAACCTCCGACACAGGGATTTTCAGCCCCCTGCTCTACCGACT 111039 ||| ||| || ||| ||||||| |||||||| ||||||||| || |||||||||||||| Sbjct 2063 TGGCCTGGGACGGAATCGAACCGCCGACACAAGGATTTTCAATCCTCTGCTCTACCGACT 2004 Query 111040 GAGCTACCAGTCCAAG 111055 |||||||| | || || Sbjct 2003 GAGCTACCGGGCCGAG 1988 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 484191208511880