Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq10726 109 5e-19 seq6884 84.2 2e-11 >seq10726 Length=1340 Score = 109 bits (120), Expect = 5e-19 Identities = 216/317 (68%), Gaps = 2/317 (1%) Strand=Plus/Plus Query 34484 GACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTG 34543 |||||| |||||| || | ||| | ||||| ||||| ||| | || | ||| Sbjct 259 GACCAGATGCAGTGGCTGGTGGACGAGATCAAGCGCAACCCCGATTCGCGCCGGCTGGTG 318 Query 34544 ATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTC 34603 | |||| |||||| | || || | | ||||||||| |||||||||| ||| Sbjct 319 GTCAGCGCCTGGAACGTGGGCGAGCTTTCGCAGATGGCGCTGATGCCGTGCCACAACCTG 378 Query 34604 TGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGAC 34663 | ||| |||||||| | | | || |||| |||||||||||| || || || ||| Sbjct 379 TTCCAGTTCTACGTGGTGGACGGCAAGCTCAGCTGCCAGCTCTACCAGCGCAGCGGCGAC 438 Query 34664 ATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCT 34723 || | || |||||||||||||| || || ||||| ||||| || ||||| | || Sbjct 439 ATCTTCCTCGGCGTGCCGTTCAACATCGCCAGCTACGCGCTGCTGACCCACATGGTGGCG 498 Query 34724 CATGTCGTGGGGTTGGTTCCTGGG-GAGCTGGTGCATACGTTGGGGGATGCGCATATCTA 34782 || | | || ||| | |||| || | ||||||||| |||| || ||||| | || Sbjct 499 CAGGCCACCGGCCTGG-GCGTGGGCGACTTCGTGCATACGCTGGGTGACGCGCACCTGTA 557 Query 34783 CCTGAACCACATCGAGC 34799 |||||| |||||| Sbjct 558 TTCGAACCATTTCGAGC 574 Score = 109 bits (120), Expect = 5e-19 Identities = 216/317 (68%), Gaps = 2/317 (1%) Strand=Plus/Minus Query 6546 GCTCGATGTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTC-CCCAGGA 6604 |||||| |||||| || | ||||| || |||| ||||||||| | || |||| | Sbjct 574 GCTCGAAATGGTTCGAATACAGGTGCGCGTCACCCAGCGTATGCACGAAGTCGCCCACGC 515 Query 6605 ACCAACCCCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAAC 6664 ||| || | | || || | ||||| || ||||| ||||| || || ||||||||| Sbjct 514 -CCAGGCCGGTGGCCTGCGCCACCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAAC 456 Query 6665 GGCACCCCTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTC 6724 ||||| || | ||||| || || || |||||||||||| |||| || | | Sbjct 455 GGCACGCCGAGGAAGATGTCGCCGCTGCGCTGGTAGAGCTGGCAGCTGAGCTTGCCGTCC 396 Query 6725 GCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTC 6784 | |||||||| ||| | ||| |||||||||| ||||||||| | | || || | Sbjct 395 ACCACGTAGAACTGGAACAGGTTGTGGCACGGCATCAGCGCCATCTGCGAAAGCTCGCCC 336 Query 6785 GGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATC 6844 |||||| |||| | ||| | || | ||| ||||| ||||| | ||| | | Sbjct 335 ACGTTCCAGGCGCTGACCACCAGCCGGCGCGAATCGGGGTTGCGCTTGATCTCGTCCACC 276 Query 6845 ACGTACTGCAGCTGGTC 6861 | |||||| |||||| Sbjct 275 AGCCACTGCATCTGGTC 259 >seq6884 Length=2068 Score = 84.2 bits (92), Expect = 2e-11 Identities = 206/310 (66%), Gaps = 2/310 (1%) Strand=Plus/Plus Query 34484 GACCAGCTGCAGTACGTGATCGACACCTTGAAGCGGAACCCTGATGACAGAAGGATCGTG 34543 |||||| |||||| || | ||| | ||||| ||||| || | || | ||| Sbjct 1449 GACCAGATGCAGTGGCTGGTGGACGAGATCAAGCGCAACCCGGACTCGCGCCGGCTGGTG 1508 Query 34544 ATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTC 34603 || |||| |||||| || || || ||||||| | |||||||| | || Sbjct 1509 ATCAGCGCCTGGAACGTCGCCGAGCTGCCGAAGATGGCGTTGATGCCGTGCCATTCGCTG 1568 Query 34604 TGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGAC 34663 | ||| |||||||| | | || |||| ||||||||||||||| || || ||| Sbjct 1569 TTCCAGTTCTACGTGGTCGACGGCAAGCTCAGCTGCCAGCTCTATCAGCGCAGCGGCGAC 1628 Query 34664 ATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCT 34723 || | || |||||||||||||| || || ||||| ||||| ||| ||||| | || Sbjct 1629 ATCTTCCTCGGCGTGCCGTTCAACATCGCCAGCTACGCGCTGCTGACGCACATGGTGGCG 1688 Query 34724 CATGTCGTGGGGT-TGGTTCCTGGGGAGCTGGTGCATACGTTGGGGGATGCGCATATCTA 34782 || | || |||| | | || || | ||||| ||| |||| || ||||| | || Sbjct 1689 CA-GGCGACGGGTCTCGGCGTCGGCGATTTCGTGCACACGCTGGGCGACGCGCACCTGTA 1747 Query 34783 CCTGAACCAC 34792 ||||||| Sbjct 1748 TTCGAACCAC 1757 Score = 84.2 bits (92), Expect = 2e-11 Identities = 206/310 (66%), Gaps = 2/310 (1%) Strand=Plus/Minus Query 6553 GTGGTTCAGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCA-ACC 6611 ||||||| || | ||||| || |||| ||| ||||| | || || | | ||| Sbjct 1757 GTGGTTCGAATACAGGTGCGCGTCGCCCAGCGTGTGCACGAAATCGCCGACGCCGAGACC 1698 Query 6612 CCACGACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCC 6671 | || | || || | ||||| ||| ||||| ||||| || || |||||||||||||| | Sbjct 1697 CGTCGCC-TGCGCCACCATGTGCGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGC 1639 Query 6672 CTAACCCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGT 6731 | | ||||| || || ||||||||||||||| |||| || | | |||| Sbjct 1638 CGAGGAAGATGTCGCCGCTGCGCTGATAGAGCTGGCAGCTGAGCTTGCCGTCGACCACGT 1579 Query 6732 AGAATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCC 6791 |||| ||| | || | |||||||| | ||||||| || || || ||||| Sbjct 1578 AGAACTGGAACAGCGAATGGCACGGCATCAACGCCATCTTCGGCAGCTCGGCGACGTTCC 1519 Query 6792 ACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACT 6851 | |||| ||||| | || | || ||||| ||||| | ||| | || ||| Sbjct 1518 AGGCGCTGATCACCAGCCGGCGCGAGTCCGGGTTGCGCTTGATCTCGTCCACCAGCCACT 1459 Query 6852 GCAGCTGGTC 6861 ||| |||||| Sbjct 1458 GCATCTGGTC 1449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448063265032080