Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq2166 104 2e-17 seq14623 98.7 9e-16 seq28136 95.1 1e-14 seq32362 91.5 1e-13 seq25614 89.7 4e-13 >seq2166 Length=5462 Score = 104 bits (114), Expect = 2e-17 Identities = 139/191 (73%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 39095 CTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATA 39154 |||| || || || || || | ||| ||||| | || || ||||| ||||| ||||| | Sbjct 774 CTTTCTGGATGTTGTAGTCCGAAAGCGTTCGGCCATCCTCGAGCTGCTTGCCGGCAAAAA 833 Query 39155 TAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG 39214 | || ||||||||||| | || | | || || ||| ||||||||| |||| | | | Sbjct 834 TCAGGCGCTGCTGGTCAGGCGGAATACCTTCCTTTTCCTGGATTTTCTGCTTGA-CATTG 892 Query 39215 CCACCGTA-TCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 || | | ||| || ||||||||||| |||||| | || || ||||| || || ||| Sbjct 893 TCAATGCAGTCGGACGGCTCCACGTCCAACGTGATGGTCTTGCCGGTCAGGGTCTTCACA 952 Query 39274 AAGATTTGCAT 39284 ||||| ||||| Sbjct 953 AAGATCTGCAT 963 >seq14623 Length=969 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 ||||| || || || ||||||||||| |||| | || || ||||| || || ||||| Sbjct 680 TCTTTCTGGATGTTGTAATCGGCAAGGGTTCTACCATCCTCGAGCTGCTTTCCGGCAAAG 621 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || | |||||||||||| | ||| | || |||||||||| ||| || |||| | Sbjct 620 ATTAAACGCTGCTGGTCAGGGGGAATGCCCTCTTTGTCCTGGATCTTGGCCTTGACATTA 561 Query 39214 GCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTA 39270 | | ||||| ||| ||| || |||| ||||| | ||||| || || |||||| Sbjct 560 TCAATAGTATCCGAGCT---CTCAACTTCCAAGGTGATCGTCTTTCCAGTGAGGGTTTTA 504 Query 39271 ACAAAGATTTGCAT 39284 ||||| || ||||| Sbjct 503 ACAAAAATCTGCAT 490 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/210 (70%), Gaps = 6/210 (3%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| |||||| || || || ||||| ||||||||||| ||||| | || || ||||| Sbjct 237 ATGCAGCGTGGATTCCTTCTGGATATTGTAATCGGCAAGGGTTCGGCCATCTTCCAGCTG 178 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || |||||||| |||||||| ||||| | ||| | || || || ||| |||||| Sbjct 177 CTTTCCAGCAAATATCAGACGCTGTTGGTCCGGGGGAATGCCTTCCTTATCCTGGATTTT 118 Query 39201 CTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCC 39257 || | | | | || || ||| ||| || || | ||||| | || || Sbjct 117 TGCCTTTACATTGTCAATGGTGTCAGAGCT---CTCGACTTCAAGAGTGATGGTCTTGCC 61 Query 39258 CGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || || ||||| || |||||||||||||| Sbjct 60 GGTAAGAGTTTTGACGAAGATTTGCATCTT 31 >seq28136 Length=407 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 |||||| || || || ||||| || || || ||| | || || | ||| ||||||||||| Sbjct 203 CTCTTTCTGAATGTTGTAATCCGCCAGAGTGCGTCCATCTTCCAACTGCTTGCCCGCAAA 144 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 ||| ||||| |||||||||| || | | ||||||||| |||||| || | | Sbjct 143 TATCAGACGTTGCTGGTCGGGCGGGATCCCTTCTTTGTCCTGGATTTTGGCCTTCACATT 84 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | |||||||| || || || | || || | || |||||||| || || || Sbjct 83 GTCGATTGTATCGCTGCTTTCAACTTCTAAGGTTATGGTCTTGCCCGTCAGGGTCTTTAC 24 Query 39273 AAAGATTTGCATCTT 39287 ||||| |||||||| Sbjct 23 GAAGATCTGCATCTT 9 >seq32362 Length=298 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || || ||||||||||| || ||||| | || || |||||||| || |||||| Sbjct 196 TCCTTCTGGATGTTATAATCGGCCAGAGTTCGCCCATCCTCCAGCTGTTTACCAGCAAAT 137 Query 39154 ATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || | |||||| || ||||| | || || |||||| |||||| ||| | | Sbjct 136 ATGAGCCTCTGCTGATCAGGTGGAATCCCT-TCCTTGTCCTGAATTTTCGCTTTTACGTT 78 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | ||||||| ||| || |||| |||||| | || || |||| ||| || || Sbjct 77 ATCAATCGTATCGGAGCTCTCAACCTCCAGTGTGATAGTCTTGCCTGTCAACGTCTTCAC 18 Query 39273 AAAGATTTGCAT 39284 ||| || ||||| Sbjct 17 AAATATCTGCAT 6 >seq25614 Length=477 Score = 89.7 bits (98), Expect = 4e-13 Identities = 163/235 (69%), Gaps = 8/235 (3%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||||||||||| || | ||||||||| || || || ||||| ||||| ||||| Sbjct 40 CATGCCTCCTCTTAGACGAAGCACCAAATGCAGGGTCGATTCCTTTTGAATATTGTAATC 99 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || | || | | || || ||||| || || || || ||||| | ||||||||| | Sbjct 100 AGCCAAGGTCCTGCCATCCTCCAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGGTCAGG 159 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCG 39229 ||| | | || |||||| ||| || |||| ||| | | | || || ||| Sbjct 160 GGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCCGAGCT-- 216 Query 39230 ACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| || |||| || || | ||||| || || ||||| |||||||||||||| Sbjct 217 -CTCAACTTCCAATGTAATTGTCTTTCCAGTTAGTGTTTTTACAAAGATTTGCAT 270 Score = 86.0 bits (94), Expect = 5e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 ||||| || || || ||||||||||| ||||| |||| |||||||| || || || || Sbjct 308 TCTTTCTGGATGTTGTAATCGGCAAGGGTTCGGCCGTCCTCAAGCTGCTTTCCTGCGAAG 367 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || |||||||||||||||| ||| | | || |||||| ||| || Sbjct 368 ATCAGACGCTGCTGGTCGGGGGGGATCCCTTCCTTGTCCTGGATCTT 414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429359550243107