Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq14623 127 1e-24 seq28136 114 9e-21 seq7414 113 3e-20 seq20474 93.3 3e-14 seq25614 82.4 5e-11 >seq14623 Length=969 Score = 127 bits (140), Expect = 1e-24 Identities = 152/204 (75%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| |||||||||||||| ||||| |||||||| | |||||||| | || Sbjct 490 ATGCAGATTTTTGTTAAAACCCTCACTGGAAAGACGATCACCTTGGAAGTTGAGAGCTCG 549 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || ||| |||| ||| | || | || || |||||||| || | || || || || Sbjct 550 GATACTATTGATAATGTCAAGGC-CAAGATCCAGGACAAAGAGGGCATTCCCCCTGACCA 608 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||||||||| |||||||| || || || || || | | || | | ||||||||| Sbjct 609 GCAGCGTTTAATCTTTGCCGGAAAGCAGCTCGAGGATGGTAGAACCCTTGCCGATTACAA 668 Query 23790 CATACAAAAAGAGTCCACATTACA 23813 ||| || ||||| ||||| || || Sbjct 669 CATCCAGAAAGAATCCACCTTGCA 692 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| || || || ||||| || | |||||||| | || Sbjct 262 ATGCAGATCTTCGTCAAAACCCTGACTGGTAAGACGATAACGTTGGAAGTTGAGAGCTCG 321 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || |||| | ||||| || || ||||| ||||| | ||||| || || Sbjct 322 GATACCATTGACAATGTAAAAGCCAAGATCCAGGACAAGGAAGGAATCCCGCCTGACCAG 381 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || ||| | ||||||||||| || || || ||||||| || || | | || ||||| Sbjct 382 CAACGTCTGATATTTGCCGGAAAGCAGCTCGAAGACGGCCGAACCCTGGCAGACTACAAT 441 Query 23791 ATACAAAAAGAGTCCAC 23807 || ||||| || || || Sbjct 442 ATTCAAAAGGAATCAAC 458 >seq28136 Length=407 Score = 114 bits (126), Expect = 9e-21 Identities = 151/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| || ||||| ||||| || || || || | |||||||| | Sbjct 9 AAGATGCAGATCTTCGTAAAGACCCTGACGGGCAAGACCATAACCTTAGAAGTTGAAAGC 68 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | || || | || ||| | || | |||| | ||||||||||| | ||||| || Sbjct 69 AGCGATACAATCGACAATGTGAAGGCCAAAA-TCCAGGACAAAGAAGGGATCCCGCCCGA 127 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || || ||| | |||||||| ||||| || ||||||| | ||||||| | | ||||| Sbjct 128 CCAGCAACGTCTGATATTTGCGGGCAAGCAGTTGGAAGATGGACGCACTCTGGCGGATTA 187 Query 23787 CAACATACAAAAAGAGTCCACATTACA 23813 |||||| || |||||||| || || || Sbjct 188 CAACATTCAGAAAGAGTCAACCTTGCA 214 >seq7414 Length=1926 Score = 113 bits (124), Expect = 3e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| || || | ||||| || ||||||||||| || || || || Sbjct 227 AAGATGCAGATTTTCGTGAAGACGTTGACGGGCAAGACGATCACTCTTGACGTCGAGTCG 168 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 ||||| | | || || | || || || ||| ||||| ||||| | || || || Sbjct 167 TCGGACTCGATCGACAACGTGAAGAC-GAAGATTCAGGACAAGGAAGGCATTCCTCCTGA 109 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||||||| || || |||||||| || ||||| || | ||||| || |||| || Sbjct 108 CCAGCAGCGTTTGATTTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGTTGAGCGACTA 49 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || ||||| || Sbjct 48 CAACATTCAGAAGGAGTCGAC 28 >seq20474 Length=655 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || |||||||| || || || ||||||||||| || || | | Sbjct 324 ATGCAGATTTTTGTGAAGACCCTCACTGGTAAGACAATCACTCTCGAGGTAGAGAGCTCC 265 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| |||| | || || ||||| || || | || ||||| || Sbjct 264 GATACAATTGACAATGTTAAGGC-CAAGATCCAAGACAAGGAGGGAATCCCACCAGACCA 206 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || || || || ||||| | ||||| || | ||| || || Sbjct 205 GCAGAGGCTCATCTTTGCTGGGAAGCAGCTCGAAGATGGCCGCACCTTGGCCGACTATAA 146 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || |||||||| Sbjct 145 CATTCAGAAGGAGTCCAC 128 >seq25614 Length=477 Score = 82.4 bits (90), Expect = 5e-11 Identities = 126/177 (71%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 23632 CTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGA-AATATTAAA 23690 ||||| || || || |||||||||||||| || | | ||||| |||| ||| ||||| Sbjct 477 CTCACCGGTAAGACCATCACTCTCGAAGTCGAGAGCTCTGACACCATTGACAATGTTAAA 418 Query 23691 ACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGG 23750 | || | | ||||| ||||| | || || || || |||||| | || || || || Sbjct 417 GCTAAGA-TCCAGGACAAGGAAGGGATCCCCCCCGACCAGCAGCGTCTGATCTTCGCAGG 359 Query 23751 CAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 || || || || |||| || || | | |||||||||||| || ||||| || || Sbjct 358 AAAGCAGCTTGAGGACGGCCGAACCCTTGCCGATTACAACATCCAGAAAGAATCTAC 302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337863197373812