Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq28136 89.7 4e-13 >seq28136 Length=407 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||| | |||||| ||||| ||||| ||||| |||||||| |||| ||| |||||| Sbjct 221 CACAAGGTGCAAGGTTGACTCTTTCTGAATGTTGTAATCCGCCAGAGTGCGTCCATCTTC 162 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGC 101148 ||| || ||||||||| |||| || | ||| ||||| || | ||||||||||| Sbjct 161 CAACTGCTTGCCCGCAAATATCAGACGTTGCTGGTCGGGCGGGATCCCTTCTTTGTCCTG 102 Query 101149 AATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTT--GTTTCGACGGTAATAGTT 101206 ||||| ||||||| | | | || || || | || ||| | ||| || || Sbjct 101 GATTTTGGCCTTCACATTGTCGATTGTATCGCTG--CTTTCAACTTCTAAGGTTATGGTC 44 Query 101207 TTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 |||||||||| || || | || || ||||| Sbjct 43 TTGCCCGTCAGGGTCTTTACGAAGATCTGCAT 12 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409483362977601