Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq1997 233 2e-56 seq195 109 5e-19 >seq1997 Length=5797 Score = 233 bits (258), Expect = 2e-56 Identities = 579/872 (66%), Gaps = 24/872 (3%) Strand=Plus/Plus Query 4246 AAACACCAAATTTTTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTA 4305 |||| ||| ||| || ||||| || |||| |||||||||||||| ||||| || | || Sbjct 1814 AAACTCCAGCTTTCTGATATTCTGAAACTCTTTTTTCGAAGAAATTTGTTTTACCCTGTA 1873 Query 4306 ACGAAATATTTTCCATAAAATCAAACGGATTAGTTGCGTTGTAATGTTTTTCACACTTTA 4365 | || || | |||||||||||||||||||| | | ||| || | || |||| || Sbjct 1874 AAGAGATCATATCCATAAAATCAAACGGATTCGCAGAGTTATACACTCTTGCACATCCTA 1933 Query 4366 GAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTGGCTCA-TGAGTTCGCAGTTA 4424 |||| | |||| ||| | ||||||||||| || || ||| | |||| || ||| Sbjct 1934 ATTCTACTAATAATCTGTCGGTTACAAATTCTAAGTATTGTGTCATTAAGTTTGC-GTTC 1992 Query 4425 ATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCT 4484 ||||||||||| ||||| || || | | ||| | ||| ||| ||| ||| | || Sbjct 1993 ATTCCAATTAAGCTCACCGGAAGAGATTCTGTTATAAATTCTCTTTCAATATCAAGAGCC 2052 Query 4485 TCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATTTACTAAG-------TATCC 4537 | | | || ||| | ||| | |||| || |||||| || | | | | | Sbjct 2053 TGTACCAGGATTTCTGTAATTCTGGCTTTTGAAACTTTATTAACGAGGTGGTGGTTGTGC 2112 Query 4538 AAACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGA 4597 | ||| || |||||||||||||| | ||||| || | ||||| ||| || || Sbjct 2113 A---AATGCAC-TGCAAAATCACAATGTACGCCTTCATCACGTGAAATCAATTCATTTGA 2168 Query 4598 AAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCC 4657 ||| || | || ||||| || || | ||||| | |||| | |||| |||| || Sbjct 2169 AAAAGTAAGACCCGGCATCAATCCACGTTTTTTCAACCAATAGATAGAACAGAATGCTCC 2228 Query 4658 AGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGC 4717 || || || || ||||||||||| ||||| || | | || | || || Sbjct 2229 TGAGAAAAAGATTCCTTCTACGGCTGCAAAAGCAATCAGTCTTTCAGCAAATGA------ 2282 Query 4718 TTTGTCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTA 4777 | | || |||||||||||| ||||||| ||||||||||||| ||||| | | Sbjct 2283 ATCGGATTCAATCCATTTTAAAGCCCAGTCCGCTTTTTTCTTAATTGCCGGAAATACTTC 2342 Query 4778 TATAGCGTTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAG 4837 | ||||| || | | ||||| | |||| | ||| || || || || || Sbjct 2343 CAAAGCGTGGAAAAGCTGGTCCTTTTCTGCTTCATCTTTTACATACGTATCAATCAGAAG 2402 Query 4838 GCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGC 4897 ||| |||| || ||||| || || || || |||||||| || || |||| Sbjct 2403 AGAATAGGTTTCGCTGTGGATATTCTCCATCATGATTTGGAATCCGTAGAAAAATTTAGC 2462 Query 4898 TTCTGTTACTTGAACTTCG-TTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGT 4956 ||| | |||||||||| ||||||||| | ||| | | |||||| || || ||||||| Sbjct 2463 TTCCGGATATTGAACTTCGTTTACAAAAT-TCTCTGCCAGGTTTTCATTCACAATACCGT 2521 Query 4957 CACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAG-- 5014 | || |||||||| || |||| ||| ||||| || | || ||| || || Sbjct 2522 CTGATGCAGCAAAAAAAGCTAAAATATGTTTGATAAAATATTTCTCATCATTATTCAGCT 2581 Query 5015 -TTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACG 5073 || ||||||| | ||||| | ||||||| |||||| |||||||||| | Sbjct 2582 TATTGTTCCAGTCTGATAAATCCTGGTGCAAATCAATTTCTTCGGCAGTCCAAAAACTTG 2641 Query 5074 CTTCCGCTTTTTTGTACATAGACCAAATATCA 5105 ||||| ||| || ||| |||||||||| Sbjct 2642 CTTCCATTTTCTTATACCACTCCCAAATATCA 2673 >seq195 Length=24554 Score = 109 bits (120), Expect = 5e-19 Identities = 568/890 (64%), Gaps = 26/890 (3%) Strand=Plus/Minus Query 4262 GTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCAT 4321 |||||| ||| ||||| || ||||| || || ||||| | | || || | ||||| Sbjct 23577 GTATTCACCTACACGCTTCTCAAAGAAGTTGGTCTTGCCCTGAAGTGAGATCATGTCCAT 23518 Query 4322 AAAATCAAACGGATTAGTTGCGTTGTAA-TGTTTTTCACACTTTA-GAGCTACAAGCAAT 4379 | || ||||| || | ||| |||| | || ||| | | ||| |||| ||| Sbjct 23517 CCAGTCGAACGGGTTCTTGACGTGGTAAATCTTAGACACCCCCAATGAG-TACA-GCAGA 23460 Query 4380 CGGTCAGCTACAAATTCTATATACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTC 4439 |||||||| || || || || ||||||| |||||| |||| || || || | ||| Sbjct 23459 CGGTCAGCCACGAACTCGATGTACTGGCACATGAGCGTTGAGTTCATGCCGATGAG-CTC 23401 Query 4440 A-CAGGTAGCGCGTATGTCAAAAACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATC 4498 | |||| || | || || |||||| || || |||| || || || || || || Sbjct 23400 AACAGGGAGGGAGTCACACACAAACTCGTGCTCGATAGCCACCGCGTCACGAATGATCTC 23341 Query 4499 TTTTATTTTATCTTTAGATGGTTTATTTACTAAGTATCCAA-ACAATAAACACGCAAAAT 4557 | | | | | | ||||| || | || | | ||| | || ||||| | Sbjct 23340 GTGCACACGACTCTCCGGCAGCTTATTGACCA-GTTTGGAGTACATGAGGCAGGCAAAGT 23282 Query 4558 CACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTA 4617 | ||||| ||| || || | || || || || || ||||| | | || ||||| | Sbjct 23281 CGGTATGCATACCCTCATCACGACTGATAAGCTCATTCGAAAAGCTGAGACCAGGCATGA 23222 Query 4618 AACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTA 4677 ||| | || || ||||| || || | | || || ||||| ||||| || || || | Sbjct 23221 GACCACGTTTCTTCAGCCAGAAGATGGAGCAGAAGGAGCCAGAGAAGAAGATACCCTCCA 23162 Query 4678 CGGCGGCAAACGCTACTAATCGGGACCCGAACGAG----CTGGCTTTGTCTTTAATCCAT 4733 | | ||| ||||| | | || || | || | || ||| | ||| Sbjct 23161 CTGAGGCGAACGCAAGAAGACGCTCTGCGTATGACGACACACGCGG-GTC---ACACCAC 23106 Query 4734 TTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTTAA--ATA 4791 || | |||||| ||||| ||||| || ||||| || |||| || || | | | Sbjct 23105 TTGAGTGCCCAAGCGGCTTTCTTCTTCACACACGGGATAGTGTCAATGGCACGCAGCAAA 23046 Query 4792 ATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAG 4851 | | ||| | | | | ||| | || || ||||| || ||||| ||| | || | Sbjct 23045 AGGTCCTTCTCTACA--GCGTCCTTGATGTACGTGTCAATGAGTAGCGAATAGACCTCCG 22988 Query 4852 AATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAA 4911 | || || || || |||||||||||||| ||||| || || | |||||| | || || | Sbjct 22987 AGTGAATGTTCTCGATAGCAATCTGAAAACCGTAGAAACACCGAGCTTCGGGAACCTGCA 22928 Query 4912 CTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAA 4971 ||||||| | || | | | |||||| || || || || |||||||||||||| | Sbjct 22927 CTTCGTTGCTGAAGTTCATGGCCAGGTTTTCATTCACAATGCCATCACTGGCTGCAAAGA 22868 Query 4972 ACGCCAAAACATGAGATATAAAGT---ACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGG 5028 | || | ||||| ||||||| || | ||||| | || |||||||| | Sbjct 22867 AGGCGAGCACATGCTTGATAAAGTGACGCTCGTTGTCAG---TGAGGTTTTTCCAATCTT 22811 Query 5029 GCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGT 5088 | || | | ||| | || ||| | ||||||||||| || || ||||| |||| Sbjct 22810 TAATGTCGTGCACCAGATCCAGCTCCTCAGCCGTCCAAAACGAGGCCTCAGCTTTCTTGT 22751 Query 5089 ACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAATCTGTTG 5138 |||| ||| | |||| | ||||||||| | | ||||| | |||| Sbjct 22750 ACATCTGCCAGACATCATTCTCCTGAATCGGGAAGAGTACAAAACGGTTG 22701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426864631339487