Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq10726 89.7 4e-13 seq776 89.7 4e-13 >seq10726 Length=1340 Score = 89.7 bits (98), Expect = 4e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 27168 GTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCAT 27227 ||| ||||| ||||| || || || || || ||| | || |||||| | || |||| Sbjct 552 GTGCGCGTCACCCAGCGTATGCACGAAGTCGCCCACGCCCAGGCCGGTGGCCTGCGCCAC 493 Query 27228 CATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCC 27287 ||||| || || || | ||||||||||||||| || || || ||||| ||||| || Sbjct 492 CATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAACGGCACGCCGAGGAAGATGTCGCC 433 Query 27288 CGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGACATATGGC 27347 | |||||||||||| || ||||| || || ||||| ||||| | | | Sbjct 432 GCTGCGCTGGTAGAGCTGGCAGCTGAGCTTGCCGTCCACCACGTAGAACTGGAACAGGTT 373 Query 27348 GTGGCACGG 27356 ||||||||| Sbjct 372 GTGGCACGG 364 >seq776 Length=11329 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 27220 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 27279 || |||| ||||| || || || | ||||||||||||||| ||||| || || || Sbjct 10630 TGGGCCAGCATGTGGGTCAGCAGCGCGTAGCTGGCGATGTTGAAGGGAACGCCCAGGAAG 10571 Query 27280 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTTACGTAAAACTGA 27339 |||||| | | |||||| ||||| || ||||| || ||| ||||| ||||| Sbjct 10570 ATGTCCGCGCTGCGCTGGTATAGCTGGCAGCTGAGCTTGCCGTCGGCCACGTAGAACTGG 10511 Query 27340 CATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 27399 | | ||||||||| || || ||||| | || ||| ||||||||||| Sbjct 10510 AAGAAGGCGTGGCAGGGCATGAGCGCCATCTGCGGCAGGTCGGCCACGTTCCAGGCGCTG 10451 Query 27400 ACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA 27433 ||||||||||| | | || |||||| || ||| Sbjct 10450 ACGATGATGCGGCGGCTGTCCGGGTTGCTCTTGA 10417 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369347154769109