Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_030909.1 Length=50183 Score E Sequences producing significant alignments: (Bits) Value seq15573 185 3e-42 seq7683 163 9e-36 seq2464 145 2e-30 seq4487 140 1e-28 seq20301 129 2e-25 seq9150 129 2e-25 seq24263 93.3 1e-14 seq13678 89.7 2e-13 seq9754 86.0 2e-12 seq7611 86.0 2e-12 >seq15573 Length=905 Score = 185 bits (204), Expect = 3e-42 Identities = 273/383 (71%), Gaps = 14/383 (4%) Strand=Plus/Plus Query 33922 CCCGGAGCGAGCTGCTCGAATCGCGAGTACTTACCCAGGAACGCGCACCGGAC---AGTG 33978 ||||| || | | |||||| || | |||||| || | ||||| | || || | | Sbjct 213 CCCGGCGCCAAGTTCTCGAACCGGGTGTACTTGCCGATAAACGCCAAACGCACGAAACCG 272 Query 33979 CTTGGCTCGCCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTG 34038 | || |||||| || || || ||||||| | || |||||||| || || ||| Sbjct 273 ATGGG---GCCGTTACGCTGTTTGCCGATGATGATTTCCGCCACGCCCTTGTGCTCGGTC 329 Query 34039 TCCGGGTGATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATC 34098 || ||||| || |||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 330 TCGGGGTGGTACACCTCGTCGCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATT 389 Query 34099 GCCCCGGACTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAG 34158 || || || || |||| ||| || ||| ||| || |||||||| |||||||||| ||| Sbjct 390 GCACCAGATTCACGCAAGTCGGAGTTCACCGGGCGTTTGTTCGGGCGCTGCTCCAACGAG 449 Query 34159 CGGTTGAGCTGCGACAGCACGATCACGGGGATACCAAGCTCCATGGCCAGTAGCTTGCAC 34218 ||||| |||||||| || | || || ||| | || ||||||| |||| | Sbjct 450 CGGTTCAGCTGCGAAAGGGCAATGACCGGGCAGTTGAATTCTTTGGCCAGGGCCTTGAGC 509 Query 34219 TGGCGGGACATGTCGCTGACGTCCTCGGTGCGAGTTG--ACTTGCCG-----GAGCTCTC 34271 |||||| || ||| | || | ||| || |||| || |||| | | ||| Sbjct 510 GAGCGGGAAATCTCGGAAATTTCGTTGGTACG-GTTGTCACCGGCCGACCCCGGGATCTG 568 Query 34272 CAGCAACTGCAGGTAGTCCACCA 34294 || || |||||||||||| |||| Sbjct 569 CATCAGCTGCAGGTAGTCGACCA 591 >seq7683 Length=1870 Score = 163 bits (180), Expect = 9e-36 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 33987 GCCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTGTCCGGGTG 34046 |||||| || ||||| ||||||| | ||| |||||| | | | || || |||| || Sbjct 1731 GCCGTTCCGCTGCTTGCCGATGATGACCTCGGCCACGTTGGGCTCCTTGGAGTCCTTGTT 1672 Query 34047 ATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGA 34106 ||| ||||| ||||| | ||||||||| | ||| || ||||||||||| || || || Sbjct 1671 GTAGTAGTCGTCGCGGTAGATGAACATGATGATGTCCGCATCCTGCTCGATGGCGCCCGA 1612 Query 34107 CTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTTGAG 34166 |||||||| || |||||||| || ||||||| | ||||| |||| ||||||||||| Sbjct 1611 TTCGCGCAGATCGGACATCATGGGCCGCTTGTCGGTGCGCTGTTCCACCGAGCGGTTGAG 1552 Query 34167 CTGCGACAGCACGATCACGGGGATACCAAGCTCCATGGCCAGTAGCTT 34214 |||||||||| ||||||| ||| || ||| ||||||| | ||| Sbjct 1551 CTGCGACAGCGCGATCACCGGGCACTGCAGTTCCTTGGCCAGCATCTT 1504 >seq2464 Length=4980 Score = 145 bits (160), Expect = 2e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33987 GCCGTTGCGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTGTCCGGGTG 34046 |||||| || ||||| ||||||| | || || | | | | | || | ||||| || Sbjct 4566 GCCGTTACGCTGCTTGCCGATGATGACTTCGGCGATGTTGGGCTCCTTGCTGTCCTTGTT 4507 Query 34047 ATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGA 34106 ||| || || ||||| | ||||||||| | |||||| ||||||||||| || || || Sbjct 4506 GTAGTAGTCATCGCGGTAGATGAACATGATGATGTCGGCATCCTGCTCGATGGCACCCGA 4447 Query 34107 CTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTTGAG 34166 ||||||||||| |||||||| || ||||||| | |||||||||| || |||||||| Sbjct 4446 TTCGCGCAGGTCGGACATCATGGGGCGCTTGTCGGTGCGCTGCTCCACCGAACGGTTGAG 4387 Query 34167 CTGCGACAGCACGATCA-CGGGGATACCAAGCTCCATGGCCAGTAGCTT 34214 ||| ||||| | |||| |||| | ||| |||| ||||||| | ||| Sbjct 4386 CTGGGACAGGGCAATCACCGGGCACTGCAA-CTCCTTGGCCAGCATCTT 4339 >seq4487 Length=2993 Score = 140 bits (154), Expect = 1e-28 Identities = 162/218 (74%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 33994 CGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTGGGTGT---CCGGGTGATAG 34050 |||||||| ||||||| | ||| |||| ||| || | | | || || || ||| Sbjct 244 CGGTGCTTGCCGATGATGATCTCGGCCAGGCCCTTGTCCGGCGAGTTTTCCTTGTTGTAG 303 Query 34051 ACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGACTCG 34110 ||||| ||||| | ||||| ||||| ||| |||||||||||||| || || |||||| Sbjct 304 TAGTCGTCGCGGTAGATGAACACGATCATGTCCGCGTCCTGCTCGATTGCGCCCGACTCG 363 Query 34111 CGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTTGAGCTGC 34170 || ||||| | ||||| ||| ||||||| | ||| ||||| |||||||||||||| Sbjct 364 CGAAGGTCGGCCATCACCGGGCGCTTGTCGGTACGCGTTTCCAGCGAGCGGTTGAGCTGT 423 Query 34171 GACAGCACGATCACGGGGATACCAAGCTCCATGGCCAG 34208 |||||| ||||||| || | | | ||| ||||||| Sbjct 424 GACAGCGCGATCACCGGCACATTCAATTCCTTGGCCAG 461 >seq20301 Length=662 Score = 129 bits (142), Expect = 2e-25 Identities = 147/192 (77%), Gaps = 4/192 (2%) Strand=Plus/Minus Query 34044 GTGATAGACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCC 34103 |||||||||||| || || || | ||||||||| | |||||| ||||||||||| | || Sbjct 444 GTGATAGACCTCATCACGATAGATGAACATGATTAAGTCGGCATCCTGCTCGATGGAGCC 385 Query 34104 GGACTCGCGCAGGTCCGACATCATCGGTCGCTTGTTCGGC-CGCTGCTCCAGGGAGCGGT 34162 || || ||||| || || | | ||| ||||||| |||| ||||||||||||||||||| Sbjct 384 CGATTCACGCAGATCGGAGTTGACCGGACGCTTGT-CGGCACGCTGCTCCAGGGAGCGGT 326 Query 34163 TGAGCTGCGACAGCACGATCACGGGGATACCAAGCTCCATGGCCAGTAGCTTGCA-CTGG 34221 | |||||||||||| | | ||| || | | ||| | |||||| |||| || | | Sbjct 325 TAAGCTGCGACAGCGCCACCACCGGCACCTGCAACTCTTTCGCCAGT-GCTTTCAGCGAG 267 Query 34222 CGGGACATGTCG 34233 ||||| || ||| Sbjct 266 CGGGAGATTTCG 255 >seq9150 Length=1571 Score = 129 bits (142), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 3/197 (2%) Strand=Plus/Minus Query 33994 CGGTGCTTCGCGATGATCAACTCAGCCACGCCGCGGTACTG---GGTGTCCGGGTGATAG 34050 || ||||| ||||||| | ||| |||| ||| || | | ||| ||| || ||| Sbjct 650 CGCTGCTTGCCGATGATGATCTCGGCCAGGCCTTTGTCCGGCGAGGTTTCCTTGTTGTAG 591 Query 34051 ACCTCGTCTCGGTACACGAACATGATCACGTCGGCGTCCTGCTCGATCGCCCCGGACTCG 34110 ||||| ||||| | ||| | ||||| |||||||||||||||||| || || || ||| Sbjct 590 TAATCGTCGCGGTAGATGAAGACGATCATGTCGGCGTCCTGCTCGATGGCGCCCGATTCG 531 Query 34111 CGCAGGTCCGACATCATCGGTCGCTTGTTCGGCCGCTGCTCCAGGGAGCGGTTGAGCTGC 34170 || ||||| | ||||| ||| ||||||| | ||| || || ||||||||||||||| Sbjct 530 CGAAGGTCGGCCATCACCGGGCGCTTGTCGGTACGCGTTTCAAGCGAGCGGTTGAGCTGC 471 Query 34171 GACAGCACGATCACGGG 34187 |||||| |||| || || Sbjct 470 GACAGCGCGATGACCGG 454 >seq24263 Length=519 Score = 93.3 bits (102), Expect = 1e-14 Identities = 110/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 42756 CATGCTGATCCTGACCAGAAGACCCGGCGAAACCCTGCATATCGGCGACAACATCACCGT 42815 |||| ||||| ||||| | | ||||||||||||| |||||||| |||| || Sbjct 313 CATGTTGATCTTGACCCGCCGTGTCGGCGAAACCCTGATGATCGGCGATTCGGTCACGGT 254 Query 42816 CACGGTCCTTGGCAGCCAGGGCGACCAGGTGCGCCTCGGCATCACCGCCCCGGACGACGT 42875 || || |||||| | | ||| ||||||||||| ||||||||||||| || | || || Sbjct 253 GACCGTGCTTGGCGTCAAAGGCAACCAGGTGCGCATCGGCATCACCGCGCCCAAGGATGT 194 Query 42876 CGCCATCCACCGCTCCGAGATCTACCAGC 42904 ||| | || ||| || |||||||||| Sbjct 193 GGCCGTGCATCGCGAAGAAATCTACCAGC 165 >seq13678 Length=1044 Score = 89.7 bits (98), Expect = 2e-13 Identities = 211/312 (68%), Gaps = 10/312 (3%) Strand=Plus/Plus Query 2744 TCGTCGACCTGTTCGCCGGCGGCGGCGGTGCCAGCACCGGTCT---GGAAATGGGCCTGG 2800 || |||||||||||||||||||||||| ||||||||||| | || | || | | Sbjct 93 TCATCGACCTGTTCGCCGGCGGCGGCG---CCAGCACCGGTATATCGGGCA-GGCTATCG 148 Query 2801 GCCGCAAGGTCGACCTGGCCATCAACCACAATCCGGCGGCGATCAGCATGCACGAGGCAA 2860 || || | | ||| |||||||||||||| || | | |||||| ||||||| ||| | Sbjct 149 GCTGCCATGG-GACGTGGCCATCAACCACGATGCCGATGCGATCGGCATGCATAAGGTCA 207 Query 2861 ACCACCCGCACGCCGAGCATCTGCC-GACCGATGTCTGGGGTATCGACCCCATCGCGAGC 2919 ||||| | || || ||| || || |||| || | | | | ||| ||| || Sbjct 208 ACCACTCCCAGACCCGGCA-CTACCTCCCCGACATCCGCGAGGTGGGCCCGCTCGAAGGC 266 Query 2920 ACGAAGGGCAAGACCGTGGGCTGGCTGCACGCCTCCCCGGACTGCCGGCATCACAGCCAA 2979 || ||| || || ||| |||||| ||||| || |||||| || || ||||| Sbjct 267 ACCCGCGGCGAGCTGGTCGGCCTGCTGCATGCCTCTCCTGACTGCTCCCACCATAGCCAG 326 Query 2980 GCCGCAGGCGGCCAGCCGCGGAAGAAGGAGATCCGCGACCTAAGCTGGGTGGTGATCAAA 3039 || ||| ||||| || | ||||||||||| | | |||||||||| | Sbjct 327 GCGCTGGGCAAACAGCCTCGCAGCAAGGAGATCCGTTCGCGGACCTGGGTGGTGCACCGC 386 Query 3040 TGGGCTGGCACG 3051 ||||| || ||| Sbjct 387 TGGGCCGGAACG 398 >seq9754 Length=1476 Score = 86.0 bits (94), Expect = 2e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 47944 CGAAACCCGGCGAGCGTCGATTTC-GGCGATCCAGCGCAAGCTGAAGATCGGCTACAACC 48002 ||| ||||| || || || ||||| |||| | |||||| |||||||||||||||||||| Sbjct 814 CGAGACCCGCCGCGCCTCCATTTCCGGCG-TGCAGCGCCGGCTGAAGATCGGCTACAACC 756 Query 48003 GCGCAGCCCGCATCATCGAGCGGATGGAGAAAGAAGGCGTAGTCACAGCGGCCGACAGCA 48062 | ||||| || | |||||| ||||| | ||||| |||| || |||| || Sbjct 755 GTGCAGCGCGACTGATCGAGGCCATGGAAGCGGCCGGCGTGGTCAGCCCGCCCGAGCACA 696 Query 48063 ACGGCGGCCGCGAGGTACTGG 48083 |||||| |||| ||| |||| Sbjct 695 ACGGCGACCGCACGGTGCTGG 675 >seq7611 Length=1885 Score = 86.0 bits (94), Expect = 2e-12 Identities = 126/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Plus Query 47909 GACCCTCTGTACCAGGCGGCTGTTGAGTTCGTCCGCGAAACCCGGCGAGCGTCGATTTC- 47967 || || |||||| | | ||| || || ||||| ||| | |||||| || ||||| || Sbjct 951 GATCCGCTGTACGACGAGGCGGTGAAGATCGTCACCGAGAGCCGGCGCGCCTCGATCTCC 1010 Query 47968 GGCGATCCAGCGCAAGCTGAAGATCGGCTACAACCGCGCAGCCCGCATCATCGAGCGGAT 48027 |||| | || || |||||||||||||||||||| || || ||| | |||||| || Sbjct 1011 GGCG-TACAACGTCGCCTGAAGATCGGCTACAACCGTGCGGCGCGCCTGATCGAGGCCAT 1069 Query 48028 GGAGAAAGAAGGCGTAGTCACAGCGGCCGACAGCAACGGCGGCCGCGAGGTACTGG 48083 ||| | ||||| || || || |||| |||||||| ||| |||| |||| Sbjct 1070 GGAAGCCGCCGGCGTGGTGACGCCGCCCGAACACAACGGCGATCGCCAGGTCCTGG 1125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160396280080110