Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_030917.1 Length=93577 Score E Sequences producing significant alignments: (Bits) Value seq23296 105 4e-18 seq1923 102 5e-17 >seq23296 Length=550 Score = 105 bits (116), Expect = 4e-18 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 78263 GTGTGGGATCGACTCACCGGCAACTTCTGGTTGCCCGAGAAGGTACCGGTGTCCAACGAC 78322 |||||| | || || ||| ||||||||||| |||| || ||||| || |||| || ||| Sbjct 385 GTGTGGAACCGCCTGACCAGCAACTTCTGGCTGCCGGAAAAGGTGCCCCTGTCGAATGAC 444 Query 78323 ATCCCATCCTGGGACACCCTTACGCCGGAAGAGAAGGAACTCACTATGCGTGTGTTCACC 78382 ||| ||||||| |||||| | | | ||| || | || || || || || || ||| Sbjct 445 GTCCAGTCCTGGGCCACCCTGAGCCACGCCGAGCAGCAGCTTACCATTCGCGTCTTTACC 504 Query 78383 GGCCTCACCCTGCTCGACACCATCCAGGGCACAGTTGGCGC 78423 ||||| |||||||||||||| | ||| ||| || ||||| Sbjct 505 GGCCTGACCCTGCTCGACACGGTGCAGAACACGGTGGGCGC 545 >seq1923 Length=5946 Score = 102 bits (112), Expect = 5e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 45315 GTGGCGCTGATGCCGGATGCTCACAGCGGCAAGGGGTCCGCGGTCGGCACTGTGATCCCG 45374 ||||| |||||||||| | ||| |||||||| | | |||||| | ||||||||| Sbjct 3428 GTGGCCGTGATGCCGGACGTGCACCTGGGCAAGGGCGCGACCGTCGGCTCGGTGATCCCG 3487 Query 45375 ACCGTCGATGCGGTGATCCCCGCGGCGGTCGGCGTCGACATCGGCTGCGGCATG 45428 ||| || |||| | ||||| || || ||||||||||||||||||||||||||| Sbjct 3488 ACCCGCGGTGCGATCATCCCGGCCGCAGTCGGCGTCGACATCGGCTGCGGCATG 3541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299191954367702