Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_030929.1 Length=49033 Score E Sequences producing significant alignments: (Bits) Value seq9250 228 3e-55 seq34098 89.7 2e-13 >seq9250 Length=1556 Score = 228 bits (252), Expect = 3e-55 Identities = 278/375 (74%), Gaps = 3/375 (1%) Strand=Plus/Minus Query 7558 GAAAAACGATGGCAACCCTGAACAGCGACGTGAAGGCGTTCATCGTTCAGGCGCTGGCCT 7617 |||| | |||||| |||| | || |||||||||||| || || |||||||| |||| | Sbjct 572 GAAAGCCTATGGCAGCCCTCAGCAACGACGTGAAGGCCTTTATTGTTCAGGCCTTGGCGT 513 Query 7618 GTTTCGATACGCCATCCCAGGTTGCGGAATCGGTCAAGAAGGAATTCGGCATCGAGGTCA 7677 | ||||| | ||| || ||||| | || | ||| |||| |||||| |||||| || | Sbjct 512 GCTTCGACA-GCCTTCACAGGTGGTAGAGGCCGTCCAGAAAGAATTCAGCATCGCAGTGA 454 Query 7678 GTCGGCAGCAGATCGAGTCGCACGACCCGAACAAGGTGTGCAGCAAGGGCCTTGCCGCGA 7737 || |||||| | ||| ||||||| || | ||| | | |||||||||| ||| | Sbjct 453 CCCGCCAGCAGGTGGAGACGCACGATCCCACGAAGTACTCCGGCAAGGGCCTAGCCAAGC 394 Query 7738 AGTGGCGGATCCTCTTCGAGGACACCCGCAAGCGCTTCCGCGAGGAGATCGCCGACATCC 7797 ||| | | | ||||||||||| |||||||| ||||||||||| | ||||| || | Sbjct 393 GCTGGGTGGCCTTGTTCGAGGACACACGCAAGCGGTTCCGCGAGGAAACAGCCGAGATTC 334 Query 7798 CGATCGCCAACCGCGCCTACCGACTGAG-GGCATTGGGTCGGATGGCTGAGCGCGCCGAG 7856 | ||||| ||| | || | ||| || | ||| | ||| || ||||||||| |||||| Sbjct 333 CCATCGCGAACAGAGCTTTCCGGCTTCGCGGCCTAGGG-CGAATGGCTGAGAAGGCCGAG 275 Query 7857 GGCATGCGAAACATGGCCCTGGCTGCCCAGCTTTACGAGCAGGCCGCCAAGGAGTCGGGT 7916 |||||| ||| | || ||| |||||||||| ||||||||||| |||||||| | || Sbjct 274 AACATGCGCAACCTAGCGCTGACTGCCCAGCTGTACGAGCAGGCGGCCAAGGAATGCGGC 215 Query 7917 GGCATGTACAGCAAC 7931 | ||||||| |||| Sbjct 214 GACATGTACGTCAAC 200 >seq34098 Length=249 Score = 89.7 bits (98), Expect = 2e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 33116 TGTAGCTTCTCCAACTCGCTCCAATCCGAGGCGGAGTTCAGCCACTTGGCATAGGTCGAT 33175 || ||||| |||| ||| ||| || || ||||| | ||| ||||| |||||| Sbjct 147 TGGAGCTTTTCCAGCTCCTGCCAGTCGTTGGACGAGTTAATCCAGCGCGCATAAGTCGAT 88 Query 33176 AGCAGCATCTGCACGCTGTGGCCTAGCTGTCCAGCGATAAACGCAGGGTTCATGCCAGCC 33235 | |||||||||||||| || || |||||| |||||||| || ||||| | |||| | Sbjct 87 AAGAGCATCTGCACGCTATGCCCGAGCTGTTGGGCGATAAATGCGGGGTTGAGACCAGAC 28 Query 33236 ATCAGGCACATGGTCGCGTATGTGTGG 33262 || | ||| || ||||| || |||||| Sbjct 27 ATTAAGCATATTGTCGCATAGGTGTGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 156717833134410