Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_030931.1 Length=41871 Score E Sequences producing significant alignments: (Bits) Value seq1150 248 2e-61 seq1231 131 4e-26 >seq1150 Length=8598 Score = 248 bits (274), Expect = 2e-61 Identities = 382/538 (71%), Gaps = 13/538 (2%) Strand=Plus/Minus Query 25686 GAGGAAGAGAACAGCATCAGCATCTTCGACCCGATCGGGTACGACTGGTGGACTGGCGAG 25745 |||||||| |||||||||||||| ||| |||||| ||||||| |||| |||||| Sbjct 2511 GAGGAAGACCGCAGCATCAGCATCTATGACGTGATCGGTTACGACTACTGGAGCGGCGAG 2452 Query 25746 GGCGTCACGGCCAAGCGCATCAGCGCCGCGTTGCGAGCCATG---AAGGATGCCGACGTG 25802 |||||||| ||||||| | ||| || | || | || |||| |||| ||| Sbjct 2451 GGCGTCACCACCAAGCGTGTGGCCGCTGCACTACGCACGCTGGGCAAGGG-GCCG--GTG 2395 Query 25803 GTGGTGAACATCAACAGCCCTGGCGGAGATGTCTTCGAGGGGCTGGCGATCTACAACCTG 25862 ||| ||| ||||| ||| ||||| || | |||||||| ||| ||||||||||| Sbjct 2394 ACGGTCAACGTCAACTCCCCAGGCGGCGACATGTTCGAGGGCCTGTCGATCTACAACACC 2335 Query 25863 CTGCGCGAGCACAAGGGCAAGGTCACCGTACGCGTGCTCGGCCTGGCAGCTTCCGCAGCG 25922 ||||| |||||| | ||| ||||||| | ||||| |||||||| || || || || Sbjct 2334 CTGCGTGAGCACGACGGCGAGGTCACGATCAAGGTGCTGGGCCTGGCTGCCTCGGCGGCT 2275 Query 25923 TCGTTCATTGCCATGGCGGCCGATGAGGTGAAGATCGCCCGCGCCGGCTTCCTGATGATC 25982 || |||| |||||||||| ||| ||| ||||||| || || |||||||| |||||| Sbjct 2274 TCCATCATCGCCATGGCGGGCGACACCGTGCAGATCGCACGGGCGGGCTTCCTCATGATC 2215 Query 25983 CACAACGCCTGGACGATCGCCGCGGGTGACCGCAACGAGTTCAAGGAGGTGGCCAGCTTC 26042 |||||||| ||| | | | ||| ||| | |||| ||| | ||| | || || Sbjct 2214 CACAACGCGTGGGTGGTGGTCGCCGGTAATCGCATCGACCTGCGCGAGATCTCCGACTGG 2155 Query 26043 CTGGAGCAGATCGACGGAACCCTGGCCGACATCTACTCGGTGCGCACCGGC--GACCCGG 26100 ||||||| | ||||| | || |||||||||||||| || |||| ||||| || | | Sbjct 2154 CTGGAGCCGTTCGACCGCTCCATGGCCGACATCTACGTGGCGCGCTCCGGCATGAGCGAG 2095 Query 26101 TCGAGGACATGCAGGCGCTGATGGATGTCGAGACCTGGATGGGCGGATCGGATGCCATTG 26160 | | | || || |||||||| | |||| ||||||| ||||| |||||||| | Sbjct 2094 AAG-GAAGCCGCCCGC-CTGATGGACGCCGAGTCCTGGATCGGCGGCAGCGATGCCATCG 2037 Query 26161 AGCGTGGATTCGCTGACAGCCTGCTGGAGTCAGAC---GCCACCAAGGACGACGCCAA 26215 |||| || | || ||| |||||| || ||| | | ||||| ||||| ||| Sbjct 2036 AGCGCGGCCTGGCCGACGAGCTGCTGCCCTCCGACCAGGTCGGCAAGGGCGACGGCAA 1979 Score = 185 bits (204), Expect = 2e-42 Identities = 537/813 (66%), Gaps = 44/813 (5%) Strand=Plus/Minus Query 26849 TGGTTGAGCCGCAGCGCCTTCCTGGCATCGACGTGATGCCGAAGCAGCGCCTGTTCATTC 26908 |||| | |||||||||| | || || | | || |||| | |||||||||||| | | Sbjct 1217 TGGTGGTGCCGCAGCGCGTGCCGGGTGTGGTCGCCCCGCCGGACCAGCGCCTGTTCGTGC 1158 Query 26909 GCGACCTGATCGCTCCGGGGC-GCACCACTTCGCCGGCGAT-CTTCTGGGTTCAACAG-- 26964 | || ||| | | || ||||| |||| ||| || || | || |||| | Sbjct 1157 GTGATCTGCT-GTTCTGGGGCCGCACG-----GCCAGCAATGCCATTGAGTTCGTGCGCG 1104 Query 26965 --ACCGGCTTCACCAACGCCGCCGCAGTCGTGCCGGAGAACACCGC------GAAGCCGT 27016 || |||||||||||| ||| || |||| | ||||| | || |||||| Sbjct 1103 AAACGGGCTTCACCAACAACGCTGCCCCCGTGGCTGAGAATCCGGCCGATCCGAAGCCCG 1044 Query 27017 ACAGCAGCATCACGTTCGGCACCAAGATCACCCCGGTGACCACCATCGCGCACATGTTCA 27076 | ||| |||||||||| || | | | | | ||| ||||||||| ||| | || Sbjct 1043 AAAGCGATATCACGTTCGAGCCCGACAGCGCGGCCGTGCGCACCATCGCCCACTTCATCC 984 Query 27077 AGGCGTCCAAGCAGATCCTTGATGACTTCGCTCAACTGCAGTCGACCGTGGACACCGAGA 27136 || |||||||||||||| || || | | || |||||| | ||| ||| | | Sbjct 983 GCGCCTCCAAGCAGATCCTGGAAGATGTGCCGCAGCTGCAGGCCTACGTCGACGGCCGGC 924 Query 27137 TGCGCTTCGGCCTGAAGTATGTCGAAG--AGCAGG--AGATCCTGTTCGGCGATGGCACC 27192 ||| || |||||||||| || |||| || || || | ||| ||| |||| Sbjct 923 TGCTCTACGGCCTGAAG---GT-GAAGGAAGAAGCCCAGCTGCTGAACGGATCTGGCGTG 868 Query 27193 GGCGCGCACCTCGACGGCATCGTGCCGCAAGCCTCTGCGTTC---AGCGCCGCCTTCGCG 27249 || ||||| |||||||| | || ||| |||||| | | | | | || || Sbjct 867 GGTCTCAACCTCAACGGCATCAACACCCAGGCCACTGCGTATGCAAACCCGGGCGTCACG 808 Query 27250 GTCGAGCAGCAGAA--CGGTATCGATGACCTGCGCCTGGCGATGCTGCAGGCCCAGCTGG 27307 || | | ||| |||| || ||||||| | || |||||||||| ||||||| Sbjct 807 GTGGTCGATGAGACGCCGGTG--GACCGCCTGCGCATCGCCATGCTGCAGGTGCAGCTGG 750 Query 27308 CGCGCCTGC-CGGCATCCGGCCACGTTCTGCACTTCATCGACTGGGCGAAGATCGAGCTG 27366 | || | | | ||| ||| ||| ||| | |||||||||||| ||||||| ||| Sbjct 749 C-CGAGTACGCAGCAGATGGCATCGTGCTGAATCCCATCGACTGGGCCGAGATCGAACTG 691 Query 27367 ACCAAGGACACCCTGGGCCGCTACATCCTCGCCAACCCGCTGGGCCTGGCCGGCCCGCTG 27426 |||||| ||| |||| ||||| | |||||||||| | ||| || || | || | Sbjct 690 CTCAAGGAAACCACGGGCGGCTACCTGTTCGCCAACCCCCAAGGCGTGACCAGTCCCGTC 631 Query 27427 CTGTGGGGCCTGCCGGTGGTTG---CCACTGAAATCGCCGCGTTCCAGGGCAAGTTCCTG 27483 |||||||||| |||||||| | |||| | |||||| | ||||| |||||| Sbjct 630 CTGTGGGGCCGCCCGGTGGTCGCGACCACGGCCATCGCCAC------CGGCAACTTCCTG 577 Query 27484 ACTGGTGCGTTCCAGACCGGCGCGCAGATCTTCGATCGCGAAGACGCCAACGTGGTGATC 27543 || || | |||| | || || | || || ||||||||||||||| | | | Sbjct 576 ACCGGCTCCTTCCGCATGGGTGCCATGGGCTGGGACCGCGAAGACGCCAACATCGCCGTG 517 Query 27544 TCCACCGAGAACGCCGACGACTTCGAGAAGAACATGATCTCGATCCGTTGCGAAGAGCGC 27603 || | || || ||| |||||| |||||||||| | |||||| |||||||||||| Sbjct 516 AGCAACCAGGACCGTGACAACTTCGTGAAGAACATGGTGACGATCCTCTGCGAAGAGCGC 457 Query 27604 CTGGCGCTGGCCGTGAAGCGCCCCGAGGCGTTC 27636 | || || ||||| |||||||| |||||| Sbjct 456 ATCGCCCTCACCGTGTTCCGCCCCGAAGCGTTC 424 >seq1231 Length=8178 Score = 131 bits (144), Expect = 4e-26 Identities = 152/200 (76%), Gaps = 9/200 (5%) Strand=Plus/Minus Query 15826 GGAGGTGCGC--CAGTGAGCACGATCATCATGTCGGCCTGCTGGCCTCTCCAGGGAATGA 15883 || || |||| || |||||||||| |||||| ||||||||||||| || || |||| Sbjct 1438 GGGGGCGCGCAGCAATGAGCACGATGATCATGGCGGCCTGCTGGCCGCT---GGCAATGT 1382 Query 15884 GCCCTGCGCAGAAGGCGGTGCTTATCTCGCTGGCAGACCAGGCGAACGACCAAGGGGTGT 15943 ||| ||||||||||| ||||| || || ||||| |||||||| ||||| | || |||| Sbjct 1381 CCCCGGCGCAGAAGGCTGTGCTGATTTCCCTGGCCGACCAGGCCAACGATGACGGCGTGT 1322 Query 15944 GCTGGCC-GGCGGTG-GACAGCATAGCGACGCGTTGCTGCCTGTCGAAGCGCGCTGTGCA 16001 ||||||| |||| || ||| || |||| ||| |||||||| |||| || || || Sbjct 1321 GCTGGCCTGGCGTTGCGAC--GATTGCGAAGCGCACATGCCTGTCCGAGCGTGCCGTACA 1264 Query 16002 GCAGGCCATCAAGTGGCTGC 16021 | |||||| ||||||| Sbjct 1263 AGATGCCATCGCATGGCTGC 1244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133809105286494