Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_030940.1 Length=32637 Score E Sequences producing significant alignments: (Bits) Value seq12001 201 2e-47 seq31058 138 2e-28 seq25102 122 2e-23 seq11171 113 9e-21 seq17944 109 1e-19 seq15025 107 4e-19 seq29313 105 1e-18 seq34590 93.3 9e-15 seq13175 84.2 5e-12 seq22629 82.4 2e-11 >seq12001 Length=1198 Score = 201 bits (222), Expect = 2e-47 Identities = 309/439 (70%), Gaps = 4/439 (1%) Strand=Plus/Minus Query 31030 CAGACGGACGGGCGGATCCGCGATCAGGCCATGGAGCGCGAGGTAGAGGCCCTGGAGAAC 31089 |||||||| || ||||| || |||| || ||||||||||| || ||| || ||| Sbjct 1192 CAGACGGATGGAAAGATCCAGGACAAGGCGATCGAGCGCGAGGTGGACGCCTTGAGCAAC 1133 Query 31090 GTCGAGCGCTACCA-AGGTAGCCGAGTCGAGATCGAGGACCACGCGACCGAGCAGGTGGG 31148 ||||||||| || || | | || || | || ||||| |||| ||| | | || Sbjct 1132 ACCGAGCGCTATCAGAGCCACACCAG-CGCCGTGGATGACCATTCGACGGAGACGATCGG 1074 Query 31149 CGGAGTCAAGCGGATCGAGGCGCTGGGTGCGCTCAAGCTGTTATCCGGCGGATCCGCCAG 31208 || ||||| ||| || || ||||| ||||||||| |||| || |||||||||||||| Sbjct 1073 GGGTATCAAGAAGATTGAAGCCCTGGGCGCGCTCAAGTTGTTGTCGGGCGGATCCGCCAG 1014 Query 31209 CCTGGCCGCCGTGGACGATCTACACCAGGCCACCGGGCGCGACCTGAACCTGGTTGCCAG 31268 |||||| || || || || || |||||||| || || ||||| ||||||||||| | | Sbjct 1013 CCTGGCAGCTGTCGATGACCTGCACCAGGCGACTGGCCGCGATCTGAACCTGGTAGTGGG 954 Query 31269 CCAG-CGCTACAACGCCACCATCGGCGCCGACATGGACGAACGTATCCAGGGAATGCGCC 31327 ||| ||| ||| || || ||||||| |||| | |||| ||| | || | |||| Sbjct 953 GCAGAAGCT-CAATGCGACGATCGGCGGCGACTACCAGGAACAAATCAAAGGTCTACGCC 895 Query 31328 GGAGCGTGGCGGCCGTCGCCCAGCGCCTGCAGGCGCCGACGACCTGGGTCGGATCCGCGG 31387 | ||||||| | || | ||||||||||||| | ||| ||| | || || | | Sbjct 894 GAAGCGTGGTCACTGTAAGTCGTTGCCTGCAGGCGCCAAAGACGTGGCTGGGGTCGGAAG 835 Query 31388 GCGTGAACGTCCTGCAAGTGCTGTGCGACCTGCNNNNNNNNNNGGAGCAGATGAACAACC 31447 | ||||| || |||| ||||| || ||||||| | ||||||||| || Sbjct 834 GAGTGAATGTGTTGCAGGTGCTCTGTGACCTGCTCGACCTAGTCCAAGAGATGAACACCC 775 Query 31448 AGCTGGCCGGGCACGTCCA 31466 ||||||| ||||| || || Sbjct 774 AGCTGGCTGGGCATGTGCA 756 >seq31058 Length=331 Score = 138 bits (152), Expect = 2e-28 Identities = 85/88 (97%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 2844 CCGAC-TCTGGGGGCCTATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTC 2902 ||||| ||||||| ||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 164 CCGACCTCTGGGG-CCTATAGCTCAGTTGGTTAGAGCAGAGGACTCATAATCCTTTGGTC 222 Query 2903 CACGGTTCGAGTCCGTGTGGGCCCACCA 2930 |||||||||||||||||||||||||||| Sbjct 223 CACGGTTCGAGTCCGTGTGGGCCCACCA 250 >seq25102 Length=492 Score = 122 bits (134), Expect = 2e-23 Identities = 82/90 (91%), Gaps = 4/90 (4%) Strand=Plus/Minus Query 2873 TTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTTCGAGTCCGTGTGGGCCCACCA-- 2930 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 315 TTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTTCGAGTCCGTGTGGGCCCACCAGA 256 Query 2931 -CCTTCAAAGCCGCGC-ACTGCGCGGCTTT 2958 | ||||||||||| | ||||||||||| Sbjct 255 TACGACAAAGCCGCGCGATTGCGCGGCTTT 226 >seq11171 Length=1283 Score = 113 bits (124), Expect = 9e-21 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 2854 GGGCCTATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTTCGAG 2913 |||||||||||||||| ||||||||||| ||||||||||||| ||||||||| |||| || Sbjct 266 GGGCCTATAGCTCAGTTGGTTAGAGCAGCGGACTCATAATCCGTTGGTCCACAGTTCAAG 325 Query 2914 TCCGTGTGGGCCCACCA 2930 || |||||||||||||| Sbjct 326 TCTGTGTGGGCCCACCA 342 >seq17944 Length=769 Score = 109 bits (120), Expect = 1e-19 Identities = 147/200 (74%), Gaps = 10/200 (5%) Strand=Plus/Minus Query 27205 GCGGGCTACCTGAAGGCCAACGGCGCC--GCCGTCAGCCG-TACCGCTTACGCCGCTCTG 27261 || ||||||||| ||||||||||||| | ||| || |||| || || || ||| Sbjct 769 GCCGGCTACCTGCGGGCCAACGGCGCCCAGGTGTCGCGCGCTACC---TATGCGGCGCTG 713 Query 27262 TTCGCCACTATCGGAACCTACTACGGCGCGGGAGATGGATCGACGACGTTCAACCTGCCG 27321 ||||| | |||| ||| ||||||||| || ||||| || || || |||||||||||| Sbjct 712 TTCGCGGCGCTCGGCACCCACTACGGCGGCGGCGATGGCTCCACCACCTTCAACCTGCCG 653 Query 27322 GATTATCGCGGCGAATTTT--TGCGCGCACTGGACGACGGTCGGGGACTCGACCTGGGGC 27379 ||| ||||| || || |||||| || |||||||| || || | |||| ||||| Sbjct 652 GAT--GCGCGGGCCATGTTCCTGCGCGGCCTCGACGACGGCCGCGGGGTGGACCCGGGGC 595 Query 27380 GCCAATTGGGCACTCTCCAG 27399 || |||||||| ||||| Sbjct 594 GCTTCTTGGGCACGATCCAG 575 >seq15025 Length=942 Score = 107 bits (118), Expect = 4e-19 Identities = 72/79 (91%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 2852 GGGGGCCTATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTTCG 2911 |||||||||||||||| | ||||||||||||||||||||||||||||||| | |||||| Sbjct 28 GGGGGCCTATAGCTCAAT-GGTTAGAGCAGAGGACTCATAATCCTTTGGTTCCAGGTTCG 86 Query 2912 AGTCCGTGTGGGCCCACCA 2930 ||||| |||||||||||| Sbjct 87 AGTCCTGGTGGGCCCACCA 105 >seq29313 Length=376 Score = 105 bits (116), Expect = 1e-18 Identities = 60/61 (98%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 2850 CTGGGGGCCTATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTT 2909 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTGAGGGCCTATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTT 2 Query 2910 C 2910 | Sbjct 1 C 1 >seq34590 Length=233 Score = 93.3 bits (102), Expect = 9e-15 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 2853 GGGGCCTATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTTCGA 2912 ||||||||||||||| |||||||||||| ||||||||||||| ||||| | ||||||| Sbjct 157 GGGGCCTATAGCTCAA-CGGTTAGAGCAGGGGACTCATAATCCCTTGGTTCCAGGTTCGA 215 Query 2913 GTCCGTGTGGGCCCACCA 2930 ||| |||||||||||| Sbjct 216 ATCCTGGTGGGCCCACCA 233 >seq13175 Length=1086 Score = 84.2 bits (92), Expect = 5e-12 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9264 CCGTACCGCCGAAAAGTTCGTAGTGCGCCTACCTGACGGCATGCGCGATCGGGTCGCGGA 9323 |||||| || || || || || || || | || ||||||||||| || || |||| || Sbjct 589 CCGTACGGCTGACAAATTTGTCGTTCGGTTGCCCGACGGCATGCGTGAACGCATCGCTGA 648 Query 9324 GACTGCGCGGGACAACCATCGCAGCATGAATTCGGAGATCATCGCCCGCTTGGAACAGA 9382 || || | |||||||||||||||| || ||||||||||||||| |||| |||| Sbjct 649 TGTGGCTCGCCAACACCATCGCAGCATGAACTCTGAGATCATCGCCCGCCTGGAGCAGA 707 >seq22629 Length=574 Score = 82.4 bits (90), Expect = 2e-11 Identities = 59/67 (88%), Gaps = 1/67 (1%) Strand=Plus/Plus Query 2850 CTGGGGGCCTATAGCTCAGTCGGTTAGAGCAGAGGACTCATAATCCTTTGGTCCACGGTT 2909 || ||||| | ||||||||| |||||||||||||||||||||||||||||||| |||| Sbjct 260 CTTGGGGCGT-TAGCTCAGTTGGTTAGAGCAGAGGACTCATAATCCTTTGGTCGTTGGTT 318 Query 2910 CGAGTCC 2916 | ||||| Sbjct 319 CAAGTCC 325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 104272775637282