Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_030943.1 Length=54990 Score E Sequences producing significant alignments: (Bits) Value seq19013 152 2e-32 >seq19013 Length=720 Score = 152 bits (168), Expect = 2e-32 Identities = 277/396 (70%), Gaps = 17/396 (4%) Strand=Plus/Minus Query 53027 TCGGCTTTGAACAGCGAGTTGAACGCCTCAGCCATCGCGTTGTCGTATGAATCCCCTTTG 53086 ||||| ||| | ||| ||||| | ||| |||| ||||||||||| || || ||| Sbjct 489 TCGGCCTTGTAGAGCCCGTTGATGGTCTCGGCCAGGGCGTTGTCGTAGCTGTCGCCCTTG 430 Query 53087 GAGCCAACAGATGTCACCGCTTCGGCTTCGGCCAGTCGTTCGGTGTAGCGGATGGCTCGG 53146 ||||| || || | | | |||| || ||||| || ||| |||||||||||| || Sbjct 429 GAGCCCACTGACGACTCGATGCCGGCCTCAGCCAGACGCTCGCTGTAGCGGATGGACAGG 370 Query 53147 TATTGCACTCCGCGGTCGGAGTGGTGGATCAGCCCGGCCACGTCGTGGCCGG-CACGCGA 53205 |||||| ||| || || ||||| || | ||| || | ||| ||||||| | ||| Sbjct 369 TATTGCGATCCACGATCCGAGTGATGCACCAGGCCTTGC--GTC-TGGCCGGGCTTGCGG 313 Query 53206 CCGTGCCCACAATCCCATGTTC-AGGGCGTCGAGGGCGAGGTCGGTGTGCATGG---TGG 53261 ||| ||| || ||||| || |||||||| ||| ||||||||||| | || Sbjct 312 TCGT----ACAGGGCC-TGTTCCAGCGCGTCGAGCACGAACTCGGTGTGCATCGAACTGC 258 Query 53262 TCGAGACCTGCCAGCCGACGACCATCCGCGAGAACACGTCCAGGACGAACGCCGCGTACA 53321 || | ||||||| |||| ||| ||||||||||| ||||||||| |||| | Sbjct 257 TCTGGC---GCCAGCCCACGATGCGCCGGCTGAACACGTCCACCACGAACGCCACGTAGA 201 Query 53322 CCCAGCCCGAGTGGGTGCGGATGTAGGTCAGGTCCGCCACCCACAACGCGTTCGGTGCCG 53381 |||||||| ||| || |||||| | ||||| ||||||| | ||| || | Sbjct 200 CCCAGCCCTGCCAGGTCGAGACGTAGGTGAAGTCCGAGACCCACAGCTGGTTGGGCCGCT 141 Query 53382 CCGCGGTGAACTGACGGTTGACCCGGT-CAGCCGGC 53416 | ||| |||||| ||||||||||||| |||| ||| Sbjct 140 CGGCGCGGAACTGCCGGTTGACCCGGTCCAGCGGGC 105 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175772188313136