Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_031007.1 Length=223935 Score E Sequences producing significant alignments: (Bits) Value seq23650 188 1e-42 seq23186 141 1e-28 seq29161 113 6e-20 seq10726 113 6e-20 seq6884 113 6e-20 seq2111 104 3e-17 seq10355 93.3 6e-14 seq776 89.7 7e-13 >seq23650 Length=538 Score = 188 bits (208), Expect = 1e-42 Identities = 202/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 99185 GAAGGCGTGCCGAAGAAAGACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAG 99244 || ||| ||| ||||| || || || || |||||||| | || ||||| || |||||| Sbjct 277 GAGGGCACGCCAAAGAACGATCGCACCGGCACCGGTACGATCTCCATTTTTGGCCACCAG 218 Query 99245 ATGCGTTTCAATCTGCAAGAAGGCTTTCCGCTGGTAACGACTAAGCGCTGTCACATGCGT 99304 ||||| ||||| ||||| ||||||||||||||||| ||||| |||||||| || | || Sbjct 217 ATGCGCTTCAACCTGCAGGAAGGCTTTCCGCTGGTCACGACCAAGCGCTGCCATTTACGC 158 Query 99305 TCGATTATTCACGAACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAAT 99364 ||||| ||||| |||||||| ||||||||| | ||||| ||||| || ||| | Sbjct 157 TCGATCATTCATGAACTGCTCTGGTTCCTGCAGGGCGACACCAACATCGCTTATCTGCGC 98 Query 99365 GATAATGGTGTAACTATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACCGGTA 99424 || ||| || | ||||||||||||||| | | || | ||||| || || || || Sbjct 97 GAGAATAACGTCTCCATTTGGGACGAATGGGCGGATGAAAACGGCGATCTGGGCCCAGTT 38 Query 99425 TACGGTAAACAGTGGCGGTCTTGGCCT 99451 || ||||| |||||||| | |||||| Sbjct 37 TATGGTAAGCAGTGGCGCGCCTGGCCT 11 >seq23186 Length=554 Score = 141 bits (156), Expect = 1e-28 Identities = 207/293 (71%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 88186 CTCATCTTCTCCACAGGGGAAGCCGGATGCGGTAAGACCTTCATGGCCACCGCCTACGCG 88245 || || ||| |||| || |||||||| || || || |||| || | ||| | ||| Sbjct 258 CTGATTTTCGCCACCGGTGAAGCCGGGTGTGGGAAAACCTGGATAAGTGCAGCCAAAGCG 317 Query 88246 GTAGAGCGATTACTGGCCAAAGACGTCGATCGTATCATTGTCACTCGCCCTGTCCTCTCC 88305 | |||| || | |||||||||||| ||||||||||||||||| || | Sbjct 318 GCAGAGGCTTTGATTCATAAAGACGTCGATAAGATCATTGTCACTCGCCCGGTATTGCAG 377 Query 88306 GCAGATGAAGACTTAGGCTTCCTGCCGGGCGATGTTGGTGAAAAGTTCGCGCCTTACTTC 88365 || |||||||| | |||||| |||| || ||| || || ||||| ||||| |||||| Sbjct 378 GCCGATGAAGATCTCGGCTTCTTGCCCGGTGATATTTCGGAGAAGTTTGCGCCGTACTTC 437 Query 88366 CGACCTGTTTACGATGTGCTCTTAAAACGTCTGGGCAGCCGTTTCTTACAATACTGCCTG 88425 || || ||||| || ||||| | || || ||||| ||| | || ||||||||| Sbjct 438 CGGCCCGTTTATGACGTGCTGGTGAAGCGGTTGGGCGCATCTTTTATGCAGTACTGCCTG 497 Query 88426 AAACCGGGTATAGACAAGGTTGAGATAGCTCCCTTCGCCTATATGCGTGGCCG 88478 |||| || | |||||| || || || || |||||||||||||| || || Sbjct 498 CGCCCGGAAATCGGCAAGGTAGAAATTGCGCCGTTCGCCTATATGCGCGGACG 550 >seq29161 Length=379 Score = 113 bits (124), Expect = 6e-20 Identities = 157/220 (71%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 99197 AAGAAAGACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAAT 99256 ||| | |||||||| || ||||||||| | |||| ||||||||||| ||| | Sbjct 220 AAGCAGGACCGTACCGGCACCGGTACCTACAGCGTGTTCGCCCACCAGATGCGCTTCGAC 161 Query 99257 CTGCAAGAAGGCTTTCCGCTGGTAACGACTAAGCGCTGTCACATGCGTTCGATTATTCAC 99316 ||| || || ||||| ||||| || || ||| || ||| | ||||| |||||| Sbjct 160 CTGGCCGACGGTTTTCCCCTGGTGACCACCAAGAAGTGCCACCTCAAGTCGATCATTCAC 101 Query 99317 GAACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTTAAATGATAATGGTGTA 99376 || |||||||||||||| | ||||| ||||| |||| || | || || ||||| ||| Sbjct 100 GAGTTGCTGTGGTTCCTGCAGGGCGACACCAACATCAAGTACCTGAAGGACAATGGCGTA 41 Query 99377 ACTATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCG 99416 || |||||||| ||| || | | |||||||||| Sbjct 40 CGCATCTGGGACGAGTGGGCCGACGAGAACGGCGACCTCG 1 >seq10726 Length=1340 Score = 113 bits (124), Expect = 6e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 99242 CAGATGCGTTTCAATCTGCAAGAAGGCTTTCCGCTGGTAACGACTAAGCG-CTGTCACAT 99300 |||||||| ||| | || | || ||||| |||||||| || || ||| ||| ||| | Sbjct 28 CAGATGCGCTTCGACCTCAACGATGGCTTCCCGCTGGTCACCACCAAGAAACTG-CACCT 86 Query 99301 GCGTTCGATTATTCACGAACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTT 99360 ||| ||||| || ||||| ||||||||||||||||| ||||| |||||| || || | Sbjct 87 GCGCTCGATCATCCACGAGCTGCTGTGGTTCCTGAAGGGCGACACCAATATCGGCTACCT 146 Query 99361 AAATGATAATGGTGTAACTATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACC 99420 || || || || || |||||||| ||| || | ||||||||||| || Sbjct 147 GAAGGACAACCAGGTGCGGATCTGGGACGAGTGGGCCGACGCGAACGGCGACCTCGGCCC 206 Query 99421 GGTATACGGTAAACAGTGGCG 99441 ||| ||||| || |||||||| Sbjct 207 GGTCTACGGCAAGCAGTGGCG 227 >seq6884 Length=2068 Score = 113 bits (124), Expect = 6e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 99242 CAGATGCGTTTCAATCTGCAAGAAGGCTTTCCGCTGGTAACGACTAAGCG-CTGTCACAT 99300 |||||||| ||| | || | |||||||| |||||||| || || ||| ||| ||| | Sbjct 1218 CAGATGCGCTTCGACCTCAACGAAGGCTTCCCGCTGGTCACCACCAAGAAACTG-CACCT 1276 Query 99301 GCGTTCGATTATTCACGAACTGCTGTGGTTCCTGAAAGGCGATACCAATGTCAAATATTT 99360 ||| ||||| || ||||| ||||||||||||||||| ||||| ||||| || || | Sbjct 1277 GCGCTCGATCATCCACGAGCTGCTGTGGTTCCTGAAGGGCGAAACCAACATCGCCTACCT 1336 Query 99361 AAATGATAATGGTGTAACTATTTGGGACGAATGGAAGAACAAAGATGGCGACCTCGGACC 99420 || || || || | || |||||||| ||| || ||||||| || || || Sbjct 1337 CAAGGACAACAAGGTCAGCATCTGGGACGAGTGGGCTGACGCGAATGGCGAACTGGGGCC 1396 Query 99421 GGTATACGGTAAACAGTGGCG 99441 ||| ||||| || |||||||| Sbjct 1397 GGTGTACGGCAAGCAGTGGCG 1417 >seq2111 Length=5547 Score = 104 bits (114), Expect = 3e-17 Identities = 154/213 (72%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 99231 TTTTCGGGCACCAGATGCGTTTCAATCTGCAAGAAGGCTTTCCGCTGGTAACGACTAAGC 99290 |||| || | |||||||| || | || ||||| ||||| |||| || || || Sbjct 2844 TTTTTGGTTATCAGATGCGCTTTGACCTTTCTGAAGGTTTTCCTATGGTTACTACCAAAA 2903 Query 99291 -GCTGTCACATGCGTTCGATTATTCACGAACTGCTGTGGTTCCTGAAAGGCGATACCAAT 99349 |||| ||| | || || || |||||||| ||||||| |||||||||||||| ||| Sbjct 2904 AGCTG-CACCTTAAATCTATCATCTACGAACTGTTGTGGTTTCTGAAAGGCGATACGAAT 2962 Query 99350 GTCAAATATTTAAATGATAATGGTGTAACTATTTGGGACGAAT-GGAAGAACAAAGATGG 99408 | ||||||||||| || || |||| || |||||||| | || ||| ||| |||| Sbjct 2963 ATTGGCTATTTAAATGAAAACGGAGTAAAAATCTGGGACGAGTGGGCAGATGAAA-ATGG 3021 Query 99409 CGACCTCGGACCGGTATACGGTAAACAGTGGCG 99441 ||| ||||| ||||| || || | || ||||| Sbjct 3022 CGAACTCGGTCCGGTTTATGGCCATCAATGGCG 3054 >seq10355 Length=1388 Score = 93.3 bits (102), Expect = 6e-14 Identities = 109/145 (75%), Gaps = 2/145 (1%) Strand=Plus/Plus Query 99203 GACCGTACGGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTGCAA 99262 || || || || || || || | ||| | ||||| |||||||||||||| |||| | Sbjct 1245 GATCGCACCGGTACGGGCACGCGCTCTGTCTTCGGCTACCAGATGCGTTTCGATCTTTCA 1304 Query 99263 GAAGGCTTTCCGCTGGTAACGACTAAG-CGCTGTCACATGCGTTCGATTATTCACGAACT 99321 |||||||| ||| || | || || ||| ||| ||| |||| || || || || || || Sbjct 1305 GAAGGCTTCCCGGTGCTGACCACCAAGAAGCT-TCATCTGCGCTCCATCATCCATGAGCT 1363 Query 99322 GCTGTGGTTCCTGAAAGGCGATACC 99346 ||||||||||||||| ||||| ||| Sbjct 1364 GCTGTGGTTCCTGAAGGGCGACACC 1388 >seq776 Length=11329 Score = 89.7 bits (98), Expect = 7e-13 Identities = 144/202 (71%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 99152 CAGTATCAAGATTTAATGACTCGCGTA-ATGAGCGAAGGCGTGCCGAAGAAAGACCGTAC 99210 ||||| ||||||| ||| | || | |||| | |||||| | |||| |||||||| Sbjct 10068 CAGTACGAAGATTTCATGCGCCATGTGTACGAGC-ACGGCGTGTCCAAGACCGACCGTAC 10126 Query 99211 GGGAACCGGTACCCTGTCTATTTTCGGGCACCAGATGCGTTTCAATCTGCAAGAAGGCTT 99270 || || || || | | ||||| ||||||||||| ||| | ||| |||||||| Sbjct 10127 CGGCACGGGCACGCGCAGCGTGTTCGGCCACCAGATGCGCTTCGACCTGTCCGAAGGCTT 10186 Query 99271 TCCGCTGGTAACGACTAAG-CGCTGTCACATGCGTTCGATTATTCACGAACTGCTGTGGT 99329 ||||||||| || || ||| | || ||| | || || || | ||||||||||||| Sbjct 10187 TCCGCTGGTCACCACCAAGAAGGTG-CACCTCAAGTCCATCATCCTGGAACTGCTGTGGT 10245 Query 99330 TCCTGAAAGGCGATACCAATGT 99351 ||||| ||||| | |||||| Sbjct 10246 TCCTGCGCGGCGACAGCAATGT 10267 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716145719823800