Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_031010.1 Length=246390 Score E Sequences producing significant alignments: (Bits) Value seq6884 183 5e-41 seq29161 163 4e-35 seq10726 158 2e-33 seq776 152 8e-32 seq23650 132 8e-26 seq10355 125 1e-23 seq10022 122 1e-22 seq2111 104 4e-17 seq482 95.1 2e-14 seq3205 93.3 7e-14 seq10892 89.7 8e-13 >seq6884 Length=2068 Score = 183 bits (202), Expect = 5e-41 Identities = 157/194 (81%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 202549 GACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACC 202608 ||||| |||||||||||||||||| | ||||||| |||||||| || ||||| | | Sbjct 1179 GACCGCACCGGCACCGGCACGCGCAGCGTGTTCGGCTGGCAGATGCGCTTCGACCTCAAC 1238 Query 202609 GAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTG 202668 ||||||||||| ||||| ||||| || || | ||||| || || ||||| ||||||||| Sbjct 1239 GAAGGCTTCCCGCTGGTCACCACCAAGAAACTGCACCTGCGCTCGATCATCCACGAGCTG 1298 Query 202669 CTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTATC 202728 |||||||||||||| || || ||||||||| ||||| || || ||| ||||| ||| Sbjct 1299 CTGTGGTTCCTGAAGGGCGAAACCAACATCGCCTACCTCAAGGACAACAAGGTCAGCATC 1358 Query 202729 TGGGACGAATGGGC 202742 |||||||| ||||| Sbjct 1359 TGGGACGAGTGGGC 1372 >seq29161 Length=379 Score = 163 bits (180), Expect = 4e-35 Identities = 156/200 (78%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 202543 AAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGAC 202602 ||| | ||||||||||||||||| || | | |||||| ||||||||| || ||| Sbjct 220 AAGCAGGACCGTACCGGCACCGGTACCTACAGCGTGTTCGCCCACCAGATGCGCTTCGAC 161 Query 202603 CTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCAC 202662 ||| |||| || || || ||||||||||| || ||| |||||| || ||||||||| Sbjct 160 CTGGCCGACGGTTTTCCCCTGGTGACCACCAAGAAGTGCCACCTCAAGTCGATCATTCAC 101 Query 202663 GAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTC 202722 ||| |||||||||||||| | || ||||||||||||| |||||||| || || || || Sbjct 100 GAGTTGCTGTGGTTCCTGCAGGGCGACACCAACATCAAGTACCTGAAGGACAATGGCGTA 41 Query 202723 ACTATCTGGGACGAATGGGC 202742 ||||||||||| ||||| Sbjct 40 CGCATCTGGGACGAGTGGGC 21 >seq10726 Length=1340 Score = 158 bits (174), Expect = 2e-33 Identities = 144/182 (79%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 202561 ACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACCGAAGGCTTCCCA 202620 |||||||| ||| | ||||||| |||||||| || ||||| | ||| |||||||| Sbjct 1 ACCGGCACCCGCAGCGTGTTCGGCTGGCAGATGCGCTTCGACCTCAACGATGGCTTCCCG 60 Query 202621 CTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTGCTGTGGTTCCTG 202680 ||||| ||||| || || | ||||| || || ||||| ||||||||||||||||||||| Sbjct 61 CTGGTCACCACCAAGAAACTGCACCTGCGCTCGATCATCCACGAGCTGCTGTGGTTCCTG 120 Query 202681 AAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTATCTGGGACGAATGG 202740 || || |||||||| ||| | |||||||| || ||| ||| ||||||||||| ||| Sbjct 121 AAGGGCGACACCAATATCGGCTACCTGAAGGACAACCAGGTGCGGATCTGGGACGAGTGG 180 Query 202741 GC 202742 || Sbjct 181 GC 182 Score = 93.3 bits (102), Expect = 7e-14 Identities = 214/316 (68%), Gaps = 16/316 (5%) Strand=Plus/Plus Query 203296 TGTCAGTTGTATCAGCGCAGCGCCGATGTCTTCTTAGGCGTGCCGTTTAACATCGCCTCG 203355 || ||| | || |||||||||| ||| ||||| | ||||||||||| ||||||||| Sbjct 412 TGCCAGCTCTACCAGCGCAGCGGCGACATCTTCCTCGGCGTGCCGTTCAACATCGCCAGC 471 Query 203356 TATGCTTTACTGACTGAGATGGTTGCTCAGCAGGTCAACATGGTGGCCGAG---GAGTTC 203412 || || | ||||| | ||||| || ||||| || | ||| || | || ||| Sbjct 472 TACGCGCTGCTGACCCACATGGTGGC---GCAGGCCACCGGCCTGGGCGTGGGCGACTTC 528 Query 203413 GTCTGGACAGGC--GGTGATACACATCTGTATTCCAACCATCTGGAGCAGGCCCGTCTGC 203470 | || | | || ||||| | || |||||||| |||||| | ||||||||||| || Sbjct 529 G--TGCATACGCTGGGTGACGCGCACCTGTATTCGAACCATTTCGAGCAGGCCCGCGAGC 586 Query 203471 AGTTAACTCGTGACCCGCACCCATTACCGCGTCTGAAATTCAA-ACGTA--AGCCCGAGT 203527 || | | ||||| |||| | | | ||| ||| || || || | | |||| Sbjct 587 AGCTGTCGCGTGAACCGCGCGCGCTGCCGAAGCTGTGGTTGAACCCGGAGGTGACCGA-- 644 Query 203528 CTATCTTCGACTACCAGTTCGAAGACTTTGAAATCGAAGGCTACGTTTCCCACGACGCCA 203587 | |||| || ||||||||| ||| | ||||| ||||||| | ||| |||| Sbjct 645 -CCTGTTCGGCTTCCAGTTCGACGACATCCGCATCGACGGCTACGACCCGCACCCGGCCA 703 Query 203588 TCAAAGCACCGGTTGC 203603 |||| || ||||| || Sbjct 704 TCAAGGCGCCGGTGGC 719 >seq776 Length=11329 Score = 152 bits (168), Expect = 8e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 202543 AAGAAAGACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGAC 202602 |||| |||||||||||||| ||||||||| | ||||||| ||||||||| || ||| Sbjct 10113 AAGACCGACCGTACCGGCACGGGCACGCGCAGCGTGTTCGGCCACCAGATGCGCTTCGAC 10172 Query 202603 CTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCAC 202662 ||| |||||||||| || ||||| ||||| || ||||| |||||| || ||||| | Sbjct 10173 CTGTCCGAAGGCTTTCCGCTGGTCACCACCAAGAAGGTGCACCTCAAGTCCATCATCCTG 10232 Query 202663 GAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTC 202722 || ||||||||||||||| || |||| ||| | | | ||| | || ||| | Sbjct 10233 GAACTGCTGTGGTTCCTGCGCGGCGACAGCAATGTGCGCTGGCTGCAGGAGCGCGGCTGC 10292 Query 202723 ACTATCTGGGACGAATGGGCGCGGGATGA 202751 || ||||||||||||||||| || || || Sbjct 10293 ACCATCTGGGACGAATGGGCCCGCGAGGA 10321 >seq23650 Length=538 Score = 132 bits (146), Expect = 8e-26 Identities = 189/260 (73%), Gaps = 11/260 (4%) Strand=Plus/Minus Query 202498 CAGTATCTCCAACTGATGGAATCCGTCCTCTCATTCGGTCATGA-AAAGAAAGACCGTAC 202556 |||||||| |||||||| || || ||| || || || | |||||| || || || Sbjct 310 CAGTATCTTGAACTGATGCAAAAAGTGCTCG-ATGAGGGCACGCCAAAGAACGATCGCAC 252 Query 202557 CGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACCGAAGGCTT 202616 ||||||||| ||| |||| | || || ||||||||| || ||||| |||||||| Sbjct 251 CGGCACCGGTACGATCTCCATTTTTGGCCACCAGATGCGCTTCAACCTGCAGGAAGGCTT 192 Query 202617 CCCACTGGTGACCACGAAAAAG-GTT--CACCTCCGTTCTATCATTCACGAGCTGCTGTG 202673 || ||||| ||||| ||| | | || | || || |||||||| || ||||| || Sbjct 191 TCCGCTGGT---CACGACCAAGCGCTGCCATTTACGCTCGATCATTCATGAACTGCTCTG 135 Query 202674 GTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGGGTCACTATCTGGGA 202733 ||||||| | || |||||||||||| ||| ||| ||| || ||| | || ||||| Sbjct 134 GTTCCTGCAGGGCGACACCAACATCGCTTATCTGCGCGAGAATAACGTCTCCATTTGGGA 75 Query 202734 CGAATGGGCGCGGGATGAAA 202753 ||||||||| |||||||| Sbjct 74 CGAATGGGC---GGATGAAA 58 >seq10355 Length=1388 Score = 125 bits (138), Expect = 1e-23 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 202549 GACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACC 202608 || || ||||| || ||||||||||| | ||||| ||||||||| || || || | Sbjct 1245 GATCGCACCGGTACGGGCACGCGCTCTGTCTTCGGCTACCAGATGCGTTTCGATCTTTCA 1304 Query 202609 GAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTG 202668 ||||||||||| || ||||||| || ||| |||| || || || ||||| || |||||| Sbjct 1305 GAAGGCTTCCCGGTGCTGACCACCAAGAAGCTTCATCTGCGCTCCATCATCCATGAGCTG 1364 Query 202669 CTGTGGTTCCTGAAAGGGGACACC 202692 |||||||||||||| || |||||| Sbjct 1365 CTGTGGTTCCTGAAGGGCGACACC 1388 >seq10022 Length=1431 Score = 122 bits (134), Expect = 1e-22 Identities = 214/310 (69%), Gaps = 4/310 (1%) Strand=Plus/Minus Query 203296 TGTCAGTTGTATCAGCGCAGCGCCGATGTCTTCTTAGGCGTGCCGTTTAACATCGCCTCG 203355 || ||| |||| |||||||||||||| ||||| | ||||||||||| ||||||||| Sbjct 569 TGCCAGCTGTACCAGCGCAGCGCCGACATCTTCCTGGGCGTGCCGTTCAACATCGCCAGC 510 Query 203356 TATGCTTTACTGACTGAGATGGTTGCTCAGCAGGTCAACATGGTGGCCGAGGAGTTCGTC 203415 || || | || || | ||||| || || ||| | || ||| | | || ||| || Sbjct 509 TACGCCCTGCTCACGCACATGGTGGCGCAACAGTGCGACCTGGAAGTGGGCGACTTCATC 450 Query 203416 TGGACAGGCGGTGAT--ACACATCTGTATTCCAACCATCTGGAGCAGGCCCGTCTGCAGT 203473 ||||| ||||| ||| |||||| || ||||||| ||||||| |||||| Sbjct 449 TGGACCGGCGGCGATTGCCACATC--TACAGCAACCATGCCGAGCAGGTGGCGCTGCAGC 392 Query 203474 TAACTCGTGACCCGCACCCATTACCGCGTCTGAAATTCAAACGTAAGCCCGAGTCTATCT 203533 | | || | ||| | | | || ||| || || ||||||| || |||| Sbjct 391 TGTCGCGCGCGCCGTTCGCGTACCCCACGCTGCGCATCCTGCGCAAGCCCGCTTCCATCT 332 Query 203534 TCGACTACCAGTTCGAAGACTTTGAAATCGAAGGCTACGTTTCCCACGACGCCATCAAAG 203593 |||||||||||||||| ||||| || | | ||||||| |||| |||||||| | Sbjct 331 TCGACTACCAGTTCGAGGACTTCGAGGTGCAGGGCTACGAACACCACCCGGCCATCAAGG 272 Query 203594 CACCGGTTGC 203603 ||||||| || Sbjct 271 CACCGGTGGC 262 Score = 111 bits (122), Expect = 2e-19 Identities = 145/199 (73%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 202549 GACCGTACCGGCACCGGCACGCGCTCCTTGTTCGGGGCCCAGATGCGGTTTGACCTGACC 202608 || || || |||||||||||| | | ||||| |||||||||||| ||||||| | Sbjct 1013 GATCGCACGGGCACCGGCACGAAAAGCGTCTTCGGCCACCAGATGCGGTTCGACCTGAAC 954 Query 202609 GAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTCCGTTCTATCATTCACGAGCTG 202668 |||||||| || |||||||| || || || || |||||| || ||||| || || Sbjct 953 GAAGGCTTTCCGCTGGTGACGACCAAGAAAGTGCACCTCAAATCCATCATCGTGGAATTG 894 Query 202669 CTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTGAACGATAACGGG--GTCACTA 202726 ||||||||||| | || || ||| | | ||||| | |||||| || || | Sbjct 893 CTGTGGTTCCTCACCGGCTCCAGTGACAACCACTGGCTGAAGG--AACGGGGCGTGACGA 836 Query 202727 TCTGGGACGAATGGGCGCG 202745 ||||||||||||||||||| Sbjct 835 TCTGGGACGAATGGGCGCG 817 >seq2111 Length=5547 Score = 104 bits (114), Expect = 4e-17 Identities = 116/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 202588 CAGATGCGGTTTGACCTGACCGAAGGCTTCCCACTGGTGACCACGAAAAAGGTTCACCTC 202647 |||||||| |||||||| | ||||| || || |||| || || |||||| | ||||| Sbjct 2855 CAGATGCGCTTTGACCTTTCTGAAGGTTTTCCTATGGTTACTACCAAAAAGCTGCACCTT 2914 Query 202648 CGTTCTATCATTCACGAGCTGCTGTGGTTCCTGAAAGGGGACACCAACATCAGTTACCTG 202707 |||||||| |||| ||| ||||||| |||||||| || || || || | || | Sbjct 2915 AAATCTATCATCTACGAACTGTTGTGGTTTCTGAAAGGCGATACGAATATTGGCTATTTA 2974 Query 202708 AACGATAACGGGGTCACTATCTGGGACGAATGGGC 202742 || || ||||| || | ||||||||||| ||||| Sbjct 2975 AATGAAAACGGAGTAAAAATCTGGGACGAGTGGGC 3009 >seq482 Length=15596 Score = 95.1 bits (104), Expect = 2e-14 Identities = 61/67 (91%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 2618 ATTTTAGGGAAGTAGTTCAATTGGTAGAGCGTCGGTCTCCAAAACCGGTTGTTGGAGGTT 2677 ||| |||| ||||||||||||||||||||||||||||||||||||| |||||| |||| Sbjct 79 ATTATAGGTCAGTAGTTCAATTGGTAGAGCGTCGGTCTCCAAAACCGAATGTTGGGGGTT 20 Query 2678 CGAGTCC 2684 ||||||| Sbjct 19 CGAGTCC 13 >seq3205 Length=3996 Score = 93.3 bits (102), Expect = 7e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 203293 TCGTGTCAGTTGTATCAGCGCAGCGCCGATGTCTTCTTAGGCGTGCCGTTTAACATCGCC 203352 || || ||| | ||||| || || || || || || ||||| || || |||||||| ||| Sbjct 2340 TCATGCCAGCTTTATCAACGTAGTGCAGACGTGTTTTTAGGGGTTCCTTTTAACATTGCC 2281 Query 203353 TCGTATGCTTTACTGACTGAGATGGTTGCTCAGCAGGTCAACATGGTGGCCGAGGAGTTC 203412 ||||||||||| ||| | ||| ||||||| | | | | | || || || Sbjct 2280 AGTTATGCTTTACTCACTCACATGATTGCTCAAGTGTGCGGTTTAGGAGTCGGTGACTTT 2221 Query 203413 GTCTGGACAGGCGGTGATACACATCTGTATTCCAACCATCTGGAGCAGGCCCGTCTGCAG 203472 || ||||||||||||||||| ||||| ||| ||| ||| | || || || | || || Sbjct 2220 GTTTGGACAGGCGGTGATACGCATCTTTATGTCAATCATTTTGAACAAGCACAACTTCAA 2161 Query 203473 TTAACTCGTGACCC 203486 || || ||||| || Sbjct 2160 TTGACACGTGAACC 2147 >seq10892 Length=1317 Score = 89.7 bits (98), Expect = 8e-13 Identities = 74/89 (83%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 2256 GGCGGGTTACTCAAGCGGC-AACGAGAGCAGACTGTAAATCTGTTGACTTCGGTCTTCGG 2314 || ||| ||| |||||||| |||| | |||||||||||||||| || ||| | |||||| Sbjct 291 GGAGGGATACCCAAGCGGCCAACGGGGGCAGACTGTAAATCTGCTGGCTTACGCCTTCGG 350 Query 2315 TGGTTCGAGTCCACCACACGCCACCAGTT 2343 |||||||| |||||| | | ||||||||| Sbjct 351 TGGTTCGAATCCACCTCCCTCCACCAGTT 379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 787969798694000