Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_031020.1 Length=163201 Score E Sequences producing significant alignments: (Bits) Value seq14841 96.9 4e-15 seq15331 89.7 5e-13 seq16087 86.0 7e-12 seq13261 82.4 8e-11 >seq14841 Length=953 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 66399 AAAATGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCT 66458 |||||||| |||| ||||| ||||||||| ||||||| ||||||||||| |||||||| Sbjct 103 AAAATGGCGACCCCTGCAGGACTCGAACCTGCGACCTACTGCTTAGAAGGCAGTTGCTCT 44 Query 66459 ATCCAGCTGAGCTAAG 66474 |||||| ||||||||| Sbjct 43 ATCCAGTTGAGCTAAG 28 >seq15331 Length=923 Score = 89.7 bits (98), Expect = 5e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 66401 AATGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTAT 66460 |||||| | ||| |||||| |||||||||| ||| ||||||||||||||| |||||||| Sbjct 1 AATGGCGCGCCCGACAGGAATCGAACCTGTAACCGCCGGCTTAGAAGGCCGGTGCTCTAT 60 Query 66461 CCAGCTGAGCTA 66472 |||| ||||||| Sbjct 61 CCAGTTGAGCTA 72 >seq16087 Length=871 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 52789 GAAACACGGATAGTCAACTGTGGGTATTTTGTAGGGTCTTCCATCGCTTCAAGCAACATT 52848 || ||||| || |||| ||||||||||||| ||||| || | || || | || | || Sbjct 1 GACACACGAATGGTCAGCTGTGGGTATTTTTCAGGGTGCTCAACGGCGTCCATCAGCGTT 60 Query 52849 TCACGATTCATTACGTTAACGTTCAGGTGCTGACCGCCTTCGACACG 52895 || ||| || ||||||||||||||||||||||| ||||| || || Sbjct 61 TCGCGACGCAGCACGTTAACGTTCAGGTGCTGACCACCTTCAACGCG 107 >seq13261 Length=1077 Score = 82.4 bits (90), Expect = 8e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 66403 TGGCACACCCTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCC 66462 |||| | ||| |||||| |||||||||| ||| ||||||||||||||| |||||||||| Sbjct 840 TGGCGCGCCCGACAGGACTCGAACCTGTAACCGCCGGCTTAGAAGGCCGGTGCTCTATCC 781 Query 66463 AGCTGAGCTA 66472 | ||||||| Sbjct 780 GGTTGAGCTA 771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521883256848840