Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_031029.1 Length=93686 Score E Sequences producing significant alignments: (Bits) Value seq19013 152 3e-32 >seq19013 Length=720 Score = 152 bits (168), Expect = 3e-32 Identities = 277/396 (70%), Gaps = 17/396 (4%) Strand=Plus/Plus Query 7177 GCCGGCTG-ACCGGGTCAACCGTCAGTTCACCGCGGCGGCACCGAACGCGTTGTGGGTGG 7235 ||| |||| ||||||||||||| |||||| ||| | | || ||| | ||||||| Sbjct 105 GCCCGCTGGACCGGGTCAACCGGCAGTTCCGCGCCGAGCGGCCCAACCAGCTGTGGGTCT 164 Query 7236 CGGACCTGACCTACATCCGCACCCACTCGGGCTGGGTGTACGCGGCGTTCGTCCTGGACG 7295 ||||| | |||||| || ||| ||||||||| |||| ||||||||| |||||| Sbjct 165 CGGACTTCACCTACGTCTCGACCTGGCAGGGCTGGGTCTACGTGGCGTTCGTGGTGGACG 224 Query 7296 TGTTCTCGCGGATGGTCGTCGGCTGGCAGGTCTCGACCA---CCATGCACACCGACCTCG 7352 ||||| ||| |||| ||||||| | || || | ||||||||||| ||| Sbjct 225 TGTTCAGCCGGCGCATCGTGGGCTGGC---GCCAGAGCAGTTCGATGCACACCGAGTTCG 281 Query 7353 CCCTCGACGCCCT-GAACATGGGATTGTGGGCACGGTCGCGTG-CCGGCCACGACGTGGC 7410 |||||||| || ||||| || ||| ||| ||| | ||||||| ||| | Sbjct 282 TGCTCGACGCGCTGGAACA-GGCCCTGT----ACGACCGCAAGCCCGGCCA-GAC--GCA 333 Query 7411 CGGGCTGATCCACCACTCCGACCGCGGAGTGCAATACCGAGCCATCCGCTACACCGAACG 7470 || ||| | || ||||| || || ||| |||||||| |||||||||||| ||| || Sbjct 334 AGGCCTGGTGCATCACTCGGATCGTGGATCGCAATACCTGTCCATCCGCTACAGCGAGCG 393 Query 7471 ACTGGCCGAAGCCGAAGCGGTGACATCTGTTGGCTCCAAAGGGGATTCATACGACAACGC 7530 ||||| || |||| | | | || || |||||||| || || ||||||||||| Sbjct 394 TCTGGCTGAGGCCGGCATCGAGTCGTCAGTGGGCTCCAAGGGCGACAGCTACGACAACGC 453 Query 7531 GATGGCTGAGGCGTTCAACTCGCTGTTCAAAGCCGA 7566 |||| ||| | ||||| ||| | ||| ||||| Sbjct 454 CCTGGCCGAGACCATCAACGGGCTCTACAAGGCCGA 489 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 299540603291413