Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_031043.1 Length=229501 Score E Sequences producing significant alignments: (Bits) Value seq23186 158 2e-33 seq23650 127 3e-24 seq10022 114 2e-20 seq3205 114 2e-20 seq10726 105 1e-17 seq6884 102 1e-16 seq2111 93.3 6e-14 seq776 93.3 6e-14 >seq23186 Length=554 Score = 158 bits (174), Expect = 2e-33 Identities = 248/353 (70%), Gaps = 4/353 (1%) Strand=Plus/Plus Query 88100 TTGAGGCCCGCAATGAAAACCAGCAGCAATACATGAATGCGCTGGAAACCAAACAACTGA 88159 ||| ||| |||||||| ||| ||| ||| ||||||| | || | || |||| Sbjct 202 TTGTGGCACGCAATGACGCTCAGGCGCAGTACCTGAATGCTATTGAGAATAAGTCGCTGA 261 Query 88160 TATTCGCCACCGGTGAAGCAGGGTGCGGTAAAACATTCCTTTGCGCCGCCTACGCTGCCG 88219 | ||||||||||||||||| ||||| || ||||| | | | || ||| | || || | Sbjct 262 TTTTCGCCACCGGTGAAGCCGGGTGTGGGAAAACCTGGATAAGTGCAGCCAAAGCGGCAG 321 Query 88220 AACGTCTACTGGCAAAAGACTTTGACCGTATCATTGTCACCCGTCCAGTCCTCTCTGCAG 88279 | | | | |||||| | || ||||||||||| || || || | || | Sbjct 322 AGGCTTTGATTCATAAAGACGTCGATAAGATCATTGTCACTCGCCCGGTATTGCAGGCCG 381 Query 88280 ATGAAGACCTTGGCTTCTTGCCCGGCGACGTCTCAGAGAAGTTCGCCCCTTACTTCCGTC 88339 ||||||| || |||||||||||||| || | || |||||||| || || |||||||| | Sbjct 382 ATGAAGATCTCGGCTTCTTGCCCGGTGATATTTCGGAGAAGTTTGCGCCGTACTTCCGGC 441 Query 88340 CTGTCTACGACGTGCTAAGCAAACGCTTAGGTGGTCAATTCTTACGC--TACTGTTTAAA 88397 | || || |||||||| || || || || | || | ||| || ||||| | Sbjct 442 CCGTTTATGACGTGCTGGTGAAGCGGTTGGGCG--CATCTTTTATGCAGTACTGCCTGCG 499 Query 88398 GCCGGGAATTGACAAGGTAGAGATTGCTCCCTTCGCCTACATGCGCGGACGTA 88450 |||| ||| | ||||||||| ||||| || |||||||| ||||||||||||| Sbjct 500 CCCGGAAATCGGCAAGGTAGAAATTGCGCCGTTCGCCTATATGCGCGGACGTA 552 >seq23650 Length=538 Score = 127 bits (140), Expect = 3e-24 Identities = 214/307 (70%), Gaps = 2/307 (1%) Strand=Plus/Minus Query 99467 CATGAAACAATATTTGGAATTAATGAGTAAGGTTTTAAATGAAGGCGTTGTTAAAGG-CG 99525 ||||||||| ||| | ||| | ||| || || | |||| ||| | |||| || Sbjct 317 CATGAAACAGTATCTTGAACTGATGCAAAAAGTGCTCGATGAGGGCAC-GCCAAAGAACG 259 Query 99526 ACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATGCGTTTTAATTTGGCTG 99585 | || || ||||| |||||| | || | ||||| || || ||||| || || || | Sbjct 258 ATCGCACCGGCACCGGTACGATCTCCATTTTTGGCCACCAGATGCGCTTCAACCTGCAGG 199 Query 99586 AAGGTTTTCCTCTGGTCACTACTAAGCGCTGTCACCTCCGTTCTATTATTCATGAACTCC 99645 |||| ||||| |||||||| || |||||||| || | || || || ||||||||||| | Sbjct 198 AAGGCTTTCCGCTGGTCACGACCAAGCGCTGCCATTTACGCTCGATCATTCATGAACTGC 139 Query 99646 TTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACTATCT 99705 | ||||||||| | || || ||||| | | || ||| || || |||| | || | Sbjct 138 TCTGGTTCCTGCAGGGCGACACCAACATCGCTTATCTGCGCGAGAATAACGTCTCCATTT 79 Query 99706 GGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGCGGT 99765 || | || |||| | || ||||| || | || || || || || ||||||||||| Sbjct 78 GGGACGAATGGGCGGATGAAAACGGCGATCTGGGCCCAGTTTATGGTAAGCAGTGGCGCG 19 Query 99766 CTTGGCC 99772 | ||||| Sbjct 18 CCTGGCC 12 >seq10022 Length=1431 Score = 114 bits (126), Expect = 2e-20 Identities = 217/317 (68%), Gaps = 2/317 (1%) Strand=Plus/Minus Query 100172 CTGTCAACTCTACCAACGTAGCGCGGACGTGTTCTTAGGTGTGCCGTTCAATATCGCGTC 100231 ||| || || ||||| || ||||| ||| | ||| | || ||||||||||| ||||| Sbjct 570 CTGCCAGCTGTACCAGCGCAGCGCCGACATCTTCCTGGGCGTGCCGTTCAACATCGCCAG 511 Query 100232 GTACGCTCTGCTGGTTCACATGTTTGCACAACAAGCCAACATGGCCGTGGGCGACTTCGT 100291 ||||| ||||| |||||| | || ||||| | || ||| |||||||||||| | Sbjct 510 CTACGCCCTGCTCACGCACATGGTGGCGCAACAGTGCGACCTGGAAGTGGGCGACTTCAT 451 Query 100292 CTGGACGGGTGGTGACGTACATCTGTATTCCAACCATCTGGAACAGACACGTACT-CAGC 100350 |||||| || || || || | || ||||||| || ||| | || |||| Sbjct 450 CTGGACCGGCGGCGATTGCCACATCTACAGCAACCATGCCGAGCAG-GTGGCGCTGCAGC 392 Query 100351 TAGGACGCACTCCGCGCACATTACCTAAATTGGTTATCAACCGTAAGCCTGACTCTATCT 100410 | ||| | ||| | | | || | || ||| || ||||| | || |||| Sbjct 391 TGTCGCGCGCGCCGTTCGCGTACCCCACGCTGCGCATCCTGCGCAAGCCCGCTTCCATCT 332 Query 100411 TCGACTATAAGTTTGAAGACTTCGAGATTGAGGACTACGAGCCTTACCCCGCCATTAAAG 100470 ||||||| |||| || ||||||||| | ||| |||||| | |||| ||||| || | Sbjct 331 TCGACTACCAGTTCGAGGACTTCGAGGTGCAGGGCTACGAACACCACCCGGCCATCAAGG 272 Query 100471 CGCCGGTGGCGATATGA 100487 | ||||||||| ||||| Sbjct 271 CACCGGTGGCGGTATGA 255 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 99893 CATTGACCAAATCTCCAAGGTCATTGACCAGTTGAAAAACGACCCAGATAACCGACGCAT 99952 ||| ||||| ||| | |||| || ||| | |||| || |||| || || ||||| Sbjct 747 CATCGACCAGATCAGCCAGGTGATCGACACGCTGAAGAAGAACCCCGACTCGCGCCGCAT 688 Query 99953 TATTGTCAGTGCATGGAACGTTGCCGACCTCGACGATATGGCCTTAGCGCCATGCCATGC 100012 || ||||| || |||||||| ||||| || ||| | |||||| | ||| |||||||| Sbjct 687 CATCGTCAGCGCCTGGAACGTGGCCGATCTGGACAAGATGGCCCTCATGCCGTGCCATGC 628 Query 100013 GTTCTTCCAGTTCTAC 100028 |||||||||||||||| Sbjct 627 GTTCTTCCAGTTCTAC 612 >seq3205 Length=3996 Score = 114 bits (126), Expect = 2e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 99510 GGCGTTGTTAAAGGCGACCGTACTGGCACTGGTACGTTGTCTCTGTTTGGGCATCAAATG 99569 |||| || |||||||||||||| ||||| || || ||| | ||||| ||||||||| Sbjct 2823 GGCGGTGACAAAGGCGACCGTACAGGCACAGGAACCCGTTCTGTATTTGGTCATCAAATG 2764 Query 99570 CGTTTTAATTTGGCTGAAGGTTTTCCTCTGGTCACTACTAAGCGCTGTCACCTCCGTTCT 99629 |||||| || | || ||||||||||| | |||| || || |||| |||||||| Sbjct 2763 CGTTTTGATCTCTCTAAAGGTTTTCCTTTACTCACCACAAAAAAAGTTCACTTCCGTTCT 2704 Query 99630 ATTATTCATGAACTCCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGAT 99689 ||| | ||| | |||||||| | ||||| || ||||| ||| || || |||||| Sbjct 2703 ATTGTGATTGAGTTACTTTGGTTTTTAAAAGGCGACACCAACGTCCAATATCTAAAAGAT 2644 Query 99690 AACGGCGTCACTATCTGGAATGAGTGGG 99717 || || | || ||| |||| |||| Sbjct 2643 AATAAAGTATCAATTTGGGATGAATGGG 2616 >seq10726 Length=1340 Score = 105 bits (116), Expect = 1e-17 Identities = 133/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 99585 GAAGGTTTTCCTCTGGTCACTACTAAGCG-CTGTCACCTCCGTTCTATTATTCATGAACT 99643 || || || || |||||||| || ||| ||| ||||| || || || || || || || Sbjct 49 GATGGCTTCCCGCTGGTCACCACCAAGAAACTG-CACCTGCGCTCGATCATCCACGAGCT 107 Query 99644 CCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACTAT 99703 || ||||||||||| || || ||||||| | |||||||| || ||| || || Sbjct 108 GCTGTGGTTCCTGAAGGGCGACACCAATATCGGCTACCTGAAGGACAACCAGGTGCGGAT 167 Query 99704 CTGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGCG 99763 |||| | ||||||| ||| |||||| ||| | || ||||| ||||| ||||||||||| Sbjct 168 CTGGGACGAGTGGGCCGACGCGAACGGCGACCTCGGCCCGGTCTACGGCAAGCAGTGGCG 227 Score = 104 bits (114), Expect = 3e-17 Identities = 216/318 (68%), Gaps = 4/318 (1%) Strand=Plus/Plus Query 100172 CTGTCAACTCTACCAACGTAGCGCGGACGTGTTCTTAGGTGTGCCGTTCAATATCGCGTC 100231 ||| || |||||||| || |||| ||| | ||| | || ||||||||||| ||||| Sbjct 411 CTGCCAGCTCTACCAGCGCAGCGGCGACATCTTCCTCGGCGTGCCGTTCAACATCGCCAG 470 Query 100232 GTACGCTCTGCTGGTTCACATGTTTGCACAACAAGCCAACATGGCCGTGGGCGACTTCGT 100291 ||||| |||||| |||||| | || || || | ||| ||||||||||||||| Sbjct 471 CTACGCGCTGCTGACCCACATGGTGGCGCAGGCCACCGGCCTGGGCGTGGGCGACTTCGT 530 Query 100292 CTGGACGGGTGGTGACGTACATCTGTATTCCAACCATCTGGAACAGACACGTACTCAGCT 100351 ||| ||||||| || |||||||| |||||| | || ||| | || ||||| Sbjct 531 GCATACGCTGGGTGACGCGCACCTGTATTCGAACCATTTCGAGCAGGCCCGCGAGCAGCT 590 Query 100352 AGGACGCACTCCGCGCACATTACCTAAATTGGTTATCAACCGTAAGCCTGACTCTA--TC 100409 || |||||| | | || || || | |||| || |||| | | | Sbjct 591 GTCGCGTGAACCGCGCGCGCTGCCGAAGCTGTGGTTGAACCCGGAG-GTGAC-CGACCTG 648 Query 100410 TTCGACTATAAGTTTGAAGACTTCGAGATTGAGGACTACGAGCCTTACCCCGCCATTAAA 100469 |||| || |||| || ||| || || || | |||||| || |||| ||||| || Sbjct 649 TTCGGCTTCCAGTTCGACGACATCCGCATCGACGGCTACGACCCGCACCCGGCCATCAAG 708 Query 100470 GCGCCGGTGGCGATATGA 100487 |||||||||||| ||||| Sbjct 709 GCGCCGGTGGCGGTATGA 726 >seq6884 Length=2068 Score = 102 bits (112), Expect = 1e-16 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 99585 GAAGGTTTTCCTCTGGTCACTACTAAGCG-CTGTCACCTCCGTTCTATTATTCATGAACT 99643 ||||| || || |||||||| || ||| ||| ||||| || || || || || || || Sbjct 1239 GAAGGCTTCCCGCTGGTCACCACCAAGAAACTG-CACCTGCGCTCGATCATCCACGAGCT 1297 Query 99644 CCTTTGGTTCCTGAAAGGGGATACCAATACCCAGTACCTGAAAGATAACGGCGTCACTAT 99703 || ||||||||||| || || ||||| | | ||||| || || ||| |||| || Sbjct 1298 GCTGTGGTTCCTGAAGGGCGAAACCAACATCGCCTACCTCAAGGACAACAAGGTCAGCAT 1357 Query 99704 CTGGAATGAGTGGGAAAACGAGAACGGTGACTTAGGACCGGTATACGGAAAGCAGTGGCG 99763 |||| | ||||||| ||| ||| || || | || ||||| ||||| ||||||||||| Sbjct 1358 CTGGGACGAGTGGGCTGACGCGAATGGCGAACTGGGGCCGGTGTACGGCAAGCAGTGGCG 1417 >seq2111 Length=5547 Score = 93.3 bits (102), Expect = 6e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 99555 TTTGGGCATCAAATGCGTTTTAATTTGGCTGAAGGTTTTCCTCTGGTCACTA-CTAAGCG 99613 ||||| |||| ||||| ||| | | |||||||||||||| |||| |||| | || | Sbjct 2846 TTTGGTTATCAGATGCGCTTTGACCTTTCTGAAGGTTTTCCTATGGTTACTACCAAAAAG 2905 Query 99614 CTGTCACCTCCGTTCTATTATTCATGAACTCCTTTGGTTCCTGAAAGGGGATACCAATAC 99673 ||| ||||| ||||| || | ||||| | ||||| |||||||| ||||| |||| Sbjct 2906 CTG-CACCTTAAATCTATCATCTACGAACTGTTGTGGTTTCTGAAAGGCGATACGAATAT 2964 Query 99674 CCAGTACCTGAAAGATAACGGCGTCACTATCTGGAATGAGTGGGAAAACGAGAACGGTGA 99733 || | || || ||||| || | |||||| | ||||||| | | || || || || Sbjct 2965 TGGCTATTTAAATGAAAACGGAGTAAAAATCTGGGACGAGTGGGCAGATGAAAATGGCGA 3024 Query 99734 CTTAGGACCGGTATACGGAAAGCAGTGGCG 99763 | || ||||| || || | || ||||| Sbjct 3025 ACTCGGTCCGGTTTATGGCCATCAATGGCG 3054 >seq776 Length=11329 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 100172 CTGTCAACTCTACCAACGTAGCGCGGACGTGTTCTTAGGTGTGCCGTTCAATATCGCGTC 100231 ||| || || ||||| || ||||||||| | ||| | || || || ||||| ||||| Sbjct 10541 CTGCCAGCTATACCAGCGCAGCGCGGACATCTTCCTGGGCGTTCCCTTCAACATCGCCAG 10600 Query 100232 GTACGCTCTGCTGGTTCACATGTTTGCACAACAAGCCAACATGGCCGTGGGCGACTTCGT 100291 ||||| |||||| |||||| | || || ||| | || || |||||||||||||| Sbjct 10601 CTACGCGCTGCTGACCCACATGCTGGCCCAGCAATGCGACCTGCAGGTGGGCGACTTCGT 10660 Query 100292 CTGGACGGGTGGTGAC 100307 |||||| ||||| ||| Sbjct 10661 CTGGACCGGTGGCGAC 10676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 733949007420840