Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_031048.1 Length=41918 Score E Sequences producing significant alignments: (Bits) Value seq14841 95.1 3e-15 seq6074 91.5 4e-14 seq23194 82.4 2e-11 seq7410 82.4 2e-11 >seq14841 Length=953 Score = 95.1 bits (104), Expect = 3e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 25273 TGGCGACCCCACCAGGAATCGAACCTGGAACCTACAGCTTAGAAGGCTGTCGCTCTATCC 25332 |||||||||| ||||| ||||||||| |||||| ||||||||||| || ||||||||| Sbjct 99 TGGCGACCCCTGCAGGACTCGAACCTGCGACCTACTGCTTAGAAGGCAGTTGCTCTATCC 40 Query 25333 GGTTGAGCTATGGGGCC 25349 ||||||||| |||||| Sbjct 39 AGTTGAGCTAAGGGGCC 23 >seq6074 Length=2299 Score = 91.5 bits (100), Expect = 4e-14 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 26922 CGTTGATTTCAGTGGTGTAGCGCTCAACGCCTTGCTGATCAGTCCATTTACGGGTTCGCA 26981 || |||| || |||| ||| ||| ||||| | ||| | || | || | |||| Sbjct 2202 CGATGATGTCGGTGGAGTACTTCTCCACGCCGTCCTGGCCGGTGTACTTGTCGTAGCGCA 2143 Query 26982 GACCGCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAGCGATTTCCGCCA 27041 | | |||||| | | | ||| |||||| ||||||||||| || || ||||| || | | Sbjct 2142 GGCTGCCTTCGACGTAGACCGAGCTGCCCTTGCGCAGGTACTCGCCGGCGATCTCGCCGA 2083 Query 27042 GCTTGCCGAAGATGACAACGCGGTGCCATTCCGTCTGCTC 27081 |||||||||||| || |||||||||||||| || |||| Sbjct 2082 GCTTGCCGAAGAACACCACGCGGTGCCATTCGGTGCGCTC 2043 >seq23194 Length=554 Score = 82.4 bits (90), Expect = 2e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 26986 GCCTTCAATGAACACCTTGCTGCCTTTGCGCAGGTATTCACCAGCGATTTCCGCCAGCTT 27045 ||| || | | ||||| |||||| ||||||||||| || || ||||| || | ||||| Sbjct 96 GCCCTCGACGTACACCGAGCTGCCCTTGCGCAGGTACTCGCCGGCGATCTCGCCGAGCTT 155 Query 27046 GCCGAAGATGACAACGCGGTGCCATTCCGT 27075 |||||||| || |||||||||||||| || Sbjct 156 GCCGAAGAACACCACGCGGTGCCATTCGGT 185 >seq7410 Length=1926 Score = 82.4 bits (90), Expect = 2e-11 Identities = 163/238 (68%), Gaps = 5/238 (2%) Strand=Plus/Plus Query 10121 CAGCGCGT-CAACGAGGCTGCAAAAGCCGTCATGCTGGCTTACGCTACTGGCGCAGACCT 10179 ||||||| |||||| || | |||||||||||||| ||||| || |||||||| Sbjct 420 CAGCGCGCGCAACGACAGCGCGCACGCCGTCATGCTGGCCTACGCCCGCGGGGCAGACCT 479 Query 10180 GGACCAGCTTGGCGCTAACGTGGGCGTACAGCGTCAGGTCATTACGCCTGCTGATGACAC 10239 |||||||| ||||| | | || || ||||| | ||| | ||||| || | || Sbjct 480 TGACCAGCTCGGCGCGTTCTTCGGGGTGCAGCGGCTGGTGGTCACGCCCGCCAACCCCAA 539 Query 10240 CACCGTGCCGCCAACGCCTGCC--TTCATGGAATCAGACGAAGATTTCCGCGCACGCATC 10297 | |||||||||| || | || | |||||| | || || | ||||||| |||||| Sbjct 540 CGCCGTGCCGCC--CGTCGCCCAGGTGATGGAAGCTGATGACGCCTTCCGCGAGCGCATC 597 Query 10298 CAGTTATCACCGGAAGGCTACACCACAGCAGGTTCAGAAGGTAGCTACGTGTTCCACG 10355 ||| | | ||| ||||||| | || || | | || ||||||||| |||| Sbjct 598 CAGCTCGCGCCGCGCGGCTACAGCGTGGCCGGCCCGGTGGGCGCCTACGTGTTTCACG 655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133959441813840