Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq19109 96.9 1e-15 >seq19109 Length=716 Score = 96.9 bits (106), Expect = 1e-15 Identities = 244/366 (67%), Gaps = 10/366 (3%) Strand=Plus/Minus Query 31075 CGCGATCTGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATACATGTCCGCCAG 31134 ||||||||| | || | | |||||||| || | |||||| ||||||| |||| ||| Sbjct 512 CGCGATCTGCGCGGTCATCTTCTCCTGCACCTGGAAGCGGCGCGCATACACGTCCACCAC 453 Query 31135 GCGGGACAGCTTGCTCAGGCCCACGATACGACCGTTCGGAATGTAGCTGATCGTGACCGT 31194 ||| | ||||||||| | |||||| | |||| || | |||| | |||| || Sbjct 452 GCGCGCCAGCTTGCTGATGCCCACCACCTTGCCGTCGGGCAGATAGCCCA-CGTGCGCGC 394 Query 31195 G-CCGAAGATCGGCGCGAGGTGATGCTCGCAATGTGAGTAGATGGGGATGTCGCGCACCG 31253 | |||| ||||||||| | ||| ||||||||||| | || ||||||||||| | Sbjct 393 GGCCGATGATCGGCGCCATGTGGTGCTCGCAATGGCTTTCGAACTCGATGTCGCGCAGCA 334 Query 31254 TCACCATCTGGTCAT-GCTTCTCCGCACCGTCTTCGAA---CACCTTCAGGATGGCCTTC 31309 | ||||| ||| | || | || | || ||||| | ||| | | Sbjct 333 CGATCATCTCGTCGTAGC----CGGCGACTTCCTCGAAGGTGCGCGCCAGATATTCGCGC 278 Query 31310 GGATCCTTGCCGTAACCGCCGCACCAGTGGCGCCAGGCCTTAGCGACGCGATGCGGAGTC 31369 |||||| | ||| |||| | |||||| ||| ||||||| || ||||| | || || Sbjct 277 GGATCCATCTGGTAGCCGCTGAACCAGTCGCGGTAGGCCTTGGCCACGCGCTTGGGCGTG 218 Query 31370 TCGAGCAGACCTTCCCGGGCAGGATCGTCCCCGACGTACTGGAGCAGACGGCGGATGTTG 31429 || ||||| || || || | ||||| || || | | | |||||| ||| | | | Sbjct 217 TCCAGCAGCCCCTCGCGCGTCGGATCCTCGCCCGCCCATTCGAGCAGCACGCGCACGGCG 158 Query 31430 TCCTCG 31435 |||||| Sbjct 157 TCCTCG 152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 187210558989504