Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudoperonospora_20cubensis_20[genbank_20GCA_5F000252605.1_202012- 03-13] 35,539 sequences; 64,332,776 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq21255 172 2e-38 seq6008 168 2e-37 seq6617 143 9e-30 seq19878 141 3e-29 seq25480 114 4e-21 seq26503 100 9e-17 seq18790 86.0 2e-12 >seq21255 Length=623 Score = 172 bits (190), Expect = 2e-38 Identities = 181/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 40166 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40225 |||||||||||| | ||||||||| |||||||| |||||||||||||| |||||||| | Sbjct 309 GAAGTCGATGTCGAAGTCGGGCATCGACACGCGTTCGGGGTTCAGGAAGCGCTCGAACAG 250 Query 40226 GAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACC 40285 || || ||| | ||||||||||| ||||| || | || |||||||| || Sbjct 249 CAGGTTGTACGGCAGCGGGTCCAGGTCGGTGATCTTCAGCGCCCATGCCACCAGCGAGCC 190 Query 40286 GGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAA 40345 |||| |||| ||||| ||||| |||| | | ||| | | |||| |||| |||||| Sbjct 189 GGCACCCGAACCACGGCCGGGGCCGATCGGAATGCCCTGGTTCTTGCCCCACTGGATGAA 130 Query 40346 GTCGGCGACGACCAGGAAGTAGGACGGGAACCCCAGCTGGATGATCATGTCGATCTCG 40403 |||||| |||| |||||||||| ||||| |||| || |||||| ||| || |||| Sbjct 129 GTCGGCCACGATCAGGAAGTAGCCGGGGAAGCCCATCTTGATGATGGTGTTGAGCTCG 72 >seq6008 Length=2324 Score = 168 bits (186), Expect = 2e-37 Identities = 188/251 (75%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 40166 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40225 |||||||||||| | ||||||||||||||| |||||||| |||||||| || ||||| | Sbjct 1035 GAAGTCGATGTCGAAGTCGGGCATGGACACCCGCTCGGGATTCAGGAAGCGTTCGAACAG 1094 Query 40226 GAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACC 40285 || || | | | ||||||||||| ||||| ||| |||||| |||||||| || Sbjct 1095 CAGGTTGTACTGCAGCGGGTCCAGGTCGGTGATCTTGAGCGCGTAGGCCACCAGCGAGCC 1154 Query 40286 GGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAA 40345 |||| | || || ||||| || ||||| |||||||||||| ||||| ||||| Sbjct 1155 GGCACCGGACCCCCGTCCCGGCCCGACAGGGCAGCCGTTCTCCTTCGCCCACTGAATGAA 1214 Query 40346 GTCGGCGACGACCAGGAAGTAGGACGGGAACCCCAGCTGGATGATCATGTCGATCTCGTA 40405 |||| | |||| |||||||||| ||||| |||| || || ||| || | | ||| | Sbjct 1215 GTCGCCCACGATCAGGAAGTAGCCGGGGAAGCCCATCTTGAGGATGGTGCCCAGTTCGAA 1274 Query 40406 CTGAAGCTGCT 40416 || ||| ||| Sbjct 1275 CTCCAGCCGCT 1285 Score = 105 bits (116), Expect = 2e-18 Identities = 129/175 (74%), Gaps = 2/175 (1%) Strand=Plus/Plus Query 39164 GCCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCTTGGCCAGAACCTCGGGCTT 39223 |||| |||| ||||||||| ||||| || || | | ||||| |||||| ||| Sbjct 30 GCCTTTCTCGGCCGCTCCCTTGCGGAAGATCTCGCGGTGTTCGGCCATCTCCTCGGCCTT 89 Query 39224 CTTCTTGCCCATGGCTCGGCGGAGAAGGTCGGCCTGACCCAGGCTGTACCCAGCGAGGAT 39283 ||||||||||||||| ||||| || | |||||| ||| |||||||| || | || | Sbjct 90 CTTCTTGCCCATGGCCCGGCGCAGCATGTCGGCACCACCGAGGCTGTAGCCGCCCAGCAC 149 Query 39284 CTGTGCCGCCTTCTGCACCTGCTCCTGGTAGATGACCAGCCCGTAGG--TCGGCC 39336 ||| || | || | ||||||||||||||| | | | |||||||| |||||| Sbjct 150 CTGGGCGGTCTGCATCACCTGCTCCTGGTACACCATGATCCCGTAGGTTTCGGCC 204 >seq6617 Length=2135 Score = 143 bits (158), Expect = 9e-30 Identities = 179/243 (74%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 40166 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40225 |||||| | ||| | ||||||||||||||| |||||||| || ||||| |||||||| | Sbjct 731 GAAGTCCACGTCGAAGTCGGGCATGGACACACGCTCGGGATTGAGGAAACGCTCGAACAG 672 Query 40226 GAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCCGAGGCAGTAGGCGACCAGCGAACC 40285 || || | ||||||||||| ||||| ||| |||||| |||||||| || Sbjct 671 CAGGTTGTATTCCAGCGGGTCCAGGTCCGTGATCTTGAGCACGTAGGCCACCAGCGAGCC 612 Query 40286 GGCAGCCGAGCCACGTCCGGGTCCGAC-CCACACGCCGTTCTCCTTGGCCCAGCCGATGA 40344 ||| |||| || || || || || || ||| |||||| ||||||||| ||||| Sbjct 611 GGCGCCCGATCCGCGGCCCGGACCCACGGGACA-GCCGTTGAGCTTGGCCCACTTGATGA 553 Query 40345 AGTCGGCGACGACCAGGAAGTAGGACGGGAACCCCAGCTGGATGATCATGTCGATCTCGT 40404 |||| | |||| ||||||||| ||| || |||| || || ||| || |||||||| Sbjct 552 AGTCACCCACGATGAGGAAGTAGCCCGGAAAGCCCATCTTGAGGATGGTGCCGATCTCGA 493 Query 40405 ACT 40407 ||| Sbjct 492 ACT 490 Score = 109 bits (120), Expect = 2e-19 Identities = 213/314 (68%), Gaps = 2/314 (1%) Strand=Plus/Minus Query 39025 ACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGACCGTACGCCG 39084 ||||||||| ||||||| |||||| | |||||| | ||||| | || ||| || | Sbjct 1875 ACTCGGCCGTGTAGTGCACCTTCAGCCAGGCCGTGTGATAGGCCAGCAGCGAGTAGGCGG 1816 Query 39085 CAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACCGCCT 39144 | | ||||| |||||||||| |||| || ||||| | | || ||| | ||| | | Sbjct 1815 CGGCGTGCGACTTGTTGAAGCCGTAGCCCGCGAACTTCTCCATCAGGTCGAAGACCTCGT 1756 Query 39145 GGATGGCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGAACTCCT 39204 | | || | ||| ||| | ||| |||| ||||| || || | | Sbjct 1755 CGGCCTTTTCCTCGCTGATGCCCTGCTTGGCCGCGCCCTCGCGGAAGATCCCGCGGTGCA 1696 Query 39205 TGGCCAGAACCTCGGGCTTCTTCTTGCCCATGGCTCGGCGGAGAAGGTCGGCCTGACCCA 39264 || ||| ||||| |||||||||||||||||| ||||| | |||||||| |||| Sbjct 1695 TGACCATTTCCTCGACCTTCTTCTTGCCCATGGCACGGCGCAAGAGGTCGGCGCCGCCCA 1636 Query 39265 GGCTGTACCCAGCGAGGATCTGTGCCGCCTTCTGCACCTGCTCCTGGTAGATGACCAGCC 39324 | ||| || | || | ||| || | || | ||||||||||||||||| | | || Sbjct 1635 GCGAGTAGCCGCCCAGCACCTGGGCGGTCTGCATCACCTGCTCCTGGTAGACCATGATCC 1576 Query 39325 CGTAGG--TCGGCC 39336 |||||| |||||| Sbjct 1575 CGTAGGTTTCGGCC 1562 >seq19878 Length=680 Score = 141 bits (156), Expect = 3e-29 Identities = 265/386 (69%), Gaps = 10/386 (3%) Strand=Plus/Plus Query 40027 AGGGCTTGTCCAGCACGCGCGCCGCGTC---CTTCATCGCGTTGCGCGCCTTGATCCGAC 40083 ||| |||| || |||| |||||| |||| | || ||| ||| ||| || | || Sbjct 3 AGGACTTGCCCTGCACCCGCGCCACGTCACGCACCACCGCCTTGGCGGCCATGGT---AC 59 Query 40084 CGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTGACGTACCTGATCA 40143 ||||||| |||||| ||| | ||||| ||||| ||||| ||||| Sbjct 60 CGAAGGTGATGATCTGGCTCACCGCATTACGGCCGTAGGCCTCGGCCACGTAGTCGATCA 119 Query 40144 CGTCGCCCCGTCGCCGGTCATC--GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTC 40201 | | | || |||| ||| |||||||| ||| | |||||||||||| || || || Sbjct 120 CCCGGTCACG--GCCGTCCATGCAGAAGTCGACGTCGAAGTCGGGCATGGAAACACGTTC 177 Query 40202 GGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGATGGGGTCCAGGTCTGTGATGCC 40261 ||||| ||||| |||||||| | || ||| | | ||||| || || ||||| Sbjct 178 AGGGTTGAGGAAGCGCTCGAACAGCAGGTCGTAGGCCAGCGGGTCGAGATCGGTGATCTT 237 Query 40262 GAGGCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCACGTCCGGGTCCGACCCACACGCC 40321 || ||||| ||||||||||| ||| |||| || || || || || ||| || | Sbjct 238 CAGTACATAGGCCACCAGCGAACCAGCACCCGAACCGCGGCCCGGGCCAACCGGTACATC 297 Query 40322 GTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCAGGAAGTAGGACGGGAACCCCAG 40381 ||| | ||||||||| ||||||||| || | ||||||||| ||||| |||| Sbjct 298 GTTGTTCTTGGCCCACTTGATGAAGTCCATAACAATCAGGAAGTAACCGGGGAAGCCCAT 357 Query 40382 CTGGATGATCATGTCGATCTCGTACT 40407 ||||||||| ||||| | |||| ||| Sbjct 358 CTGGATGATGATGTCCAGCTCGAACT 383 >seq25480 Length=481 Score = 114 bits (126), Expect = 4e-21 Identities = 114/146 (78%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 40166 GAAGTCGATGTCAACGTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGAT 40225 |||||||||||| | ||||||||| |||||||| || || || ||||| |||||||| | Sbjct 144 GAAGTCGATGTCGAAGTCGGGCATCGACACGCGTTCCGGATTGAGGAAGCGCTCGAACAG 85 Query 40226 GAGCCCGTGCGGGATGGGGTCCAGGTCTGTGA--TGCCGAGGCAGTAGGCGACCAGCGAA 40283 ||||||| ||| | ||||||||||| |||| ||| | | | | ||||||||||| Sbjct 84 CAGCCCGTACGGCAGCGGGTCCAGGTCGGTGACCTGCAGCGCC--CACGCGACCAGCGAG 27 Query 40284 CCGGCAGCCGAGCCACGTCCGGGTCC 40309 || || ||||||| || ||||| || Sbjct 26 CCCGCGCCCGAGCCGCGGCCGGGACC 1 >seq26503 Length=451 Score = 100 bits (110), Expect = 9e-17 Identities = 142/196 (72%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 40181 GTCGGGCATGGACACGCGCTCGGGGTTCAGGAACCGCTCGAAGATGAGCCCGTGCGGGAT 40240 ||||||||| |||||||| || ||||| ||||| || ||||||| ||| | | | Sbjct 448 GTCGGGCATCGACACGCGTTCCGGGTTGAGGAAGCGTTCGAAGAGCAGCGAGAAACGTAG 389 Query 40241 GGGGTCCAGGTCTGTGATGCCGAG-GCAGTAGGCGACCAGCGAACCGGCAGCCGAGCCAC 40299 || || | || || || || ||| |||||||||||||| || ||| |||| |||| Sbjct 388 CGGATCGACATCGGTAATCGTCAGCGCA-TAGGCGACCAGCGATCCCGCACCCGAACCAC 330 Query 40300 GTCCGGGTCCGACCCACACGCCGTTCTCCTTGGCCCAGCCGATGAAGTCGGCGACGACCA 40359 | ||||| |||||| | | | || ||| ||||| |||||||||||| |||| | Sbjct 329 GACCGGGGCCGACCGGAATATCATGCTGCTTTGCCCATTTGATGAAGTCGGCAACGATAA 270 Query 40360 GGAAGTAGGACGGGAA 40375 | ||||| | |||||| Sbjct 269 GAAAGTA-GCCGGGAA 255 >seq18790 Length=730 Score = 86.0 bits (94), Expect = 2e-12 Identities = 84/106 (79%), Gaps = 2/106 (2%) Strand=Plus/Minus Query 39014 GGCCGCCATGTACTCGGCCGGGTAGT-GCGTCTTCAGGTACGCCGTGCGGTAGGCGATGA 39072 |||||||||| ||||||||||||||| |||| ||||| | || || ||||| || | Sbjct 120 GGCCGCCATGAACTCGGCCGGGTAGTGGCGT-TTCAGCCATGCGGTCTGGTAGCTGACCA 62 Query 39073 GACCGTACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAA 39118 | |||| || || | ||||| |||||||||| |||| |||||||| Sbjct 61 GCGCGTAGGCGGCGGCGTGCGACTTGTTGAAGCCGTAGCCGGCGAA 16 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160073216478792